PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr0c21g0500361
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 211aa    MW: 23603.1 Da    PI: 4.9178
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr0c21g0500361genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.43.7e-163090357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr0c21g0500361 30 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 90
                               7****************96569*************************************97 PP

2Wus_type_Homeobox94.87.2e-312991364
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                               ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr0c21g0500361 29 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 91
                               78***************9889*****************************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MEPRTLQLME QQTQQQIEDG GNNQAAGTNN RWAPTPPQLR ILKGLYYDKG FKYPTPEQIQ  60
EICLHLKQYG QIEDKNVFFW FQNLKARERQ KLKEFRNVRV AGSLDLNFGS TSSTDDGRSI  120
DLNFGSTGST STDRSIDLNF GSRVGYGVDG SIMEQRGEYH QEIETLPLFP MHGEDIFGNM  180
KTTSEGGSGY GGGSRISLEL SLNSYGNADI A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.15e-22WOX family protein