PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023926936.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 499aa MW: 54023.2 Da PI: 6.4366

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023926936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.6	3.9e-06	14	52	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ + l+C+ ++ lC C ++ H+ H XP_023926936.1 14 PCDFCSEQIAVLYCRADSAKLCLFCDQHVHSAnllsrkH 52 7***************************99545555555 PP
2	zf-B_box	26.6	1.2e-08	55	100	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++++++++ C +++ lC++C l H + H+++p+ XP_023926936.1 55 SQICDNCSSEPVSVRCSTDNLVLCQECDLDAHGScsvsasHDRSPI 100 579*****************************55999999998876 PP
3	CCT	64.2	3.8e-22	450	494	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++e XP_023926936.1 450 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASE 494 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MVSPGSRRIG ETVPCDFCSE QIAVLYCRAD SAKLCLFCDQ HVHSANLLSR KHLRSQICDN 60 CSSEPVSVRC STDNLVLCQE CDLDAHGSCS VSASHDRSPI EGFSGCPSAL DLASLWGLDL 120 DDKKANQSAP SIQDWCGGGG QDLFMPSSAW MFNNDYNNNS KSSAGLCYQD LVVPNDSGGG 180 GAILGVNCGG VVTASKSCGK QRHVIYKQLV ELFKRDLPCG GGDNGGVDFE NGGGDDDHGV 240 VGSANSGGGG VLQVQQSVQQ QQQQQQQTVP FTTLLTMPTT SHVDLKETDH RAVNREMLWD 300 CDRNAQSTQI WDFNLGQLRG HEEPGILEVA YGGNDAGFMI KNIGELLKES SLANAKMLGD 360 MYPMNCPVTH DDMAFNNNSN NPTASQGPAT SESNNLPVGR SESVSAFGKA RGSSGSKDIH 420 YVEQPFLVRV DSVQTAATTK ADMELLAKNR GNAMQRYKEK KKTRRYDKHI RYESRKARAD 480 TRKRVKGRFV KASEAPDGC

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MVSPGSRRIG ETVPCDFCSE QIAVLYCRAD SAKLCLFCDQ HVHSANLLSR KHLRSQICDN  60
CSSEPVSVRC STDNLVLCQE CDLDAHGSCS VSASHDRSPI EGFSGCPSAL DLASLWGLDL  120
DDKKANQSAP SIQDWCGGGG QDLFMPSSAW MFNNDYNNNS KSSAGLCYQD LVVPNDSGGG  180
GAILGVNCGG VVTASKSCGK QRHVIYKQLV ELFKRDLPCG GGDNGGVDFE NGGGDDDHGV  240
VGSANSGGGG VLQVQQSVQQ QQQQQQQTVP FTTLLTMPTT SHVDLKETDH RAVNREMLWD  300
CDRNAQSTQI WDFNLGQLRG HEEPGILEVA YGGNDAGFMI KNIGELLKES SLANAKMLGD  360
MYPMNCPVTH DDMAFNNNSN NPTASQGPAT SESNNLPVGR SESVSAFGKA RGSSGSKDIH  420
YVEQPFLVRV DSVQTAATTK ADMELLAKNR GNAMQRYKEK KKTRRYDKHI RYESRKARAD  480
TRKRVKGRFV KASEAPDGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-105	CO-like family protein