PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023926094.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 434aa MW: 49092.1 Da PI: 4.9695

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023926094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.6	4.4e-07	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + ++++fC ++ +lC+ C + H+ H++v XP_023926094.1 16 ARACDSCLCRRARWFCAADDAFLCQACDASVHSAnqlarrHERV 59 578***999*******************657788888876 PP
2	CCT	68.1	2.3e-23	377	420	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_023926094.1 377 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 420 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MITEKKVANA LGGKTARACD SCLCRRARWF CAADDAFLCQ ACDASVHSAN QLARRHERVR 60 LQTSSFKPNN DSPPAWHQGF KRKARTPRQN KSSLVQQAKE EEKFLNLLPF VPEIGSEEAS 120 QDDSNEEQLL YRVPIFDPFA SELCNEMGKT SVDERSDESI MGKNNEVEKA VADGCGHDGV 180 CDLDDLHGLL PSDMDLAEFA ADVESLLGKG LDEESCDIKG LGLSDCKEEN DIDLCTDIGE 240 RRVKVEEEEE EIEAIVECQL NPPVDMMSET LDWNFDYESP VAGEEVKLIS MAETKMMNGK 300 ECKEEMKREM FLRLNHEAVI TAWDSRGSPW TTGTRPDFNP DDCWRDFMGL YNGDLHHQYG 360 GGDTGVGGHV GGRDEGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT 420 SFMGASTAFP YLKK

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MITEKKVANA LGGKTARACD SCLCRRARWF CAADDAFLCQ ACDASVHSAN QLARRHERVR  60
LQTSSFKPNN DSPPAWHQGF KRKARTPRQN KSSLVQQAKE EEKFLNLLPF VPEIGSEEAS  120
QDDSNEEQLL YRVPIFDPFA SELCNEMGKT SVDERSDESI MGKNNEVEKA VADGCGHDGV  180
CDLDDLHGLL PSDMDLAEFA ADVESLLGKG LDEESCDIKG LGLSDCKEEN DIDLCTDIGE  240
RRVKVEEEEE EIEAIVECQL NPPVDMMSET LDWNFDYESP VAGEEVKLIS MAETKMMNGK  300
ECKEEMKREM FLRLNHEAVI TAWDSRGSPW TTGTRPDFNP DDCWRDFMGL YNGDLHHQYG  360
GGDTGVGGHV GGRDEGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT  420
SFMGASTAFP YLKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	404	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-91	CO-like family protein