PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023923480.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 355aa MW: 39048 Da PI: 7.7119

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023923480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.5e-10	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_023923480.1 89 FKTKLCCKFRA-GTCPYVTNCNFAHS 113 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	163	188	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_023923480.1 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188 78888********************7 PP
3	zf-CCCH	42.3	1.3e-13	224	249	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023923480.1 224 WKTRICNKWELTGYCPFGSKCHFAHG 249 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MDFSGGNVVQ VITGSGPENW SVNDNAMWAT EDDYRAWSNN NGDDTPSNSN YDQRQSQSRS 60 GSEPPNKKSK NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHSIEELRRP 120 PPNWQEIVAQ HEEEKGVSSE PREEYQIPSL GSANFVGDSQ RSYKGRHCKK FYTEEGCPYG 180 DNCTFLHDEQ SKNRESVAIS LGPGGYGGAA ASPVSGPNAK PSNWKTRICN KWELTGYCPF 240 GSKCHFAHGA AGLREAYTII RGELHRYGGG LVEGETRDSS SAPPDSKQGG VPSKTPADSV 300 VVSVAPVPHS DVYHMGVPSQ RSSIVIQRPG QRTHQKWKGP DKISRIYGDW IDDIE

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MDFSGGNVVQ VITGSGPENW SVNDNAMWAT EDDYRAWSNN NGDDTPSNSN YDQRQSQSRS  60
GSEPPNKKSK NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHSIEELRRP  120
PPNWQEIVAQ HEEEKGVSSE PREEYQIPSL GSANFVGDSQ RSYKGRHCKK FYTEEGCPYG  180
DNCTFLHDEQ SKNRESVAIS LGPGGYGGAA ASPVSGPNAK PSNWKTRICN KWELTGYCPF  240
GSKCHFAHGA AGLREAYTII RGELHRYGGG LVEGETRDSS SAPPDSKQGG VPSKTPADSV  300
VVSVAPVPHS DVYHMGVPSQ RSSIVIQRPG QRTHQKWKGP DKISRIYGDW IDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-128	C3H family protein