PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023922365.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 722aa MW: 78409 Da PI: 6.5028

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023922365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.3	2.7e-08	306	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg XP_023922365.1 306 PCPEFRK-GTCRRGDLCEYAHG 326 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MCGGPEHLNP QPVLLSSSES ESLTKDMNNP AGAVESELSV SILLELAAGN DVEGFKQSIC 60 KCNASVIGEI GLWYGRQRFS KRMVLERRTP LMVAAKYGSI DVVKLILSQS EVDVNFSCGL 120 DKSTALHCAA SGGSVGAVDV VKLLLQAGAD PNTTDAYGNH PFDVIMAPAN LPNLKVALEE 180 LLRTDASSCQ QDPQVSSVDL RSSSPSLPSS PENSSLSSLS NSILSPVNCK PMYVSSVPEK 240 KEYPIDPSLP DLKSSIYASD EFRMFSFKIR PCSRAYSHDW TECPFVHPGE NARRRDPRKY 300 HYSCVPCPEF RKGTCRRGDL CEYAHGVFEC WLHPAQYRTR LCKDGTSCTR RVCFFAHTHE 360 ELRPLYVSSG SAMPSPRSAA SAAAVMDMAA ALNMFPGSPS AASAMSPSPF SPSMSPSGNG 420 ISHPSMAWPQ QNIPTLHLPG SNLQTSRLRS SFNARDIPSE EYNMLQDFEM QQQQLFNDLT 480 CLSQPHISNS GANLSVRSRT LTPSNLDELF SSELSSPRYS DQLAASSVFS PSHKSVLLNQ 540 FQQQQSMLSP IKTNVFSAKN ADHPLLQASF GVSSPGMMSP RSIEPLSPMG SRLSALSHRD 600 KQQLQFRSFS SRDLGSNLPR DLGSNSVVGS PMNSWSNWES HNGKVDWSVQ GDELGGLRKS 660 CSTAHNGEEP DVSWVQSLVK ESPSENAAVP VSGAAPSVQG SDSKPQSESA WLEQLKLDQI 720 VA

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MCGGPEHLNP QPVLLSSSES ESLTKDMNNP AGAVESELSV SILLELAAGN DVEGFKQSIC  60
KCNASVIGEI GLWYGRQRFS KRMVLERRTP LMVAAKYGSI DVVKLILSQS EVDVNFSCGL  120
DKSTALHCAA SGGSVGAVDV VKLLLQAGAD PNTTDAYGNH PFDVIMAPAN LPNLKVALEE  180
LLRTDASSCQ QDPQVSSVDL RSSSPSLPSS PENSSLSSLS NSILSPVNCK PMYVSSVPEK  240
KEYPIDPSLP DLKSSIYASD EFRMFSFKIR PCSRAYSHDW TECPFVHPGE NARRRDPRKY  300
HYSCVPCPEF RKGTCRRGDL CEYAHGVFEC WLHPAQYRTR LCKDGTSCTR RVCFFAHTHE  360
ELRPLYVSSG SAMPSPRSAA SAAAVMDMAA ALNMFPGSPS AASAMSPSPF SPSMSPSGNG  420
ISHPSMAWPQ QNIPTLHLPG SNLQTSRLRS SFNARDIPSE EYNMLQDFEM QQQQLFNDLT  480
CLSQPHISNS GANLSVRSRT LTPSNLDELF SSELSSPRYS DQLAASSVFS PSHKSVLLNQ  540
FQQQQSMLSP IKTNVFSAKN ADHPLLQASF GVSSPGMMSP RSIEPLSPMG SRLSALSHRD  600
KQQLQFRSFS SRDLGSNLPR DLGSNSVVGS PMNSWSNWES HNGKVDWSVQ GDELGGLRKS  660
CSTAHNGEEP DVSWVQSLVK ESPSENAAVP VSGAAPSVQG SDSKPQSESA WLEQLKLDQI  720
VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein