PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919778.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 1093aa MW: 119549 Da PI: 7.8883

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.1e-06	1056	1079	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 y+t+ C+f+ G Ck Gd+C++ H XP_023919778.1 1056 YRTKVCHFWEL-GKCKKGDNCTYLH 1079 89*******.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence
MVMDNAQLPR SDHSNNHHHH HHHHNEAFSG TSMFADSQQY HAYDDLFPNP VDHNNFAADP 60 SWPVDGFSGQ PQSRAPSWPS NNNNNNNNNA PSPTPPHLNA AAFARSHTNS PAQFAQNGFA 120 NYSAQQPYQY RPQQFDPALV APSASGQDYS SAFTRYGAAT QYGGTIAPRA LEHEVRPPVP 180 QRNSYASTDF PLNGLGVSRG PPLQNFVNQK DLIDSIPAGS LDAASGMIVI DANVLSQATN 240 SEHMGNYVHI GKDVFEFGVT RTPIPAYVPR KSRNELKRLA GGNQALIDKL GRKSAKKQKM 300 MVPNLSRTVK PVLTKPSDAS SEPIKYEGDS SSETDSSDDD DDDDDSSYIS DEDAGGSPLP 360 TKRPDSPKAA TEYDTIKALW RSKRKTVDSE SLRKGIVDFW EIVKTVRDRW KADQTALSDA 420 EEKKRTGELP LLRSRVKDQR DMMETAFKTA LKHGHKGILE LLGENPSLLY LCYQFLLDRW 480 KEDDANSTIA RAILELMAVL TTVDDKKLEK THLKKLFPKY ISKADAKTQW LVKKIMATSS 540 ANTKALPATG DVAIGAAPST TSATLTKNAD PKAPTGVKRA ASSTAEGSVH KKIVTGTTAS 600 GGLAPKPNGI VKKPVAPNEA GKINSAATSV VKAKTVSAKP SATGFFASLQ SATGKKTAPA 660 AAAKSATKIV EKKLATVSAS TAPKSTFSFA ETMANISKPK EPPKAAPKQE KELPPETADE 720 KKKRLRKEAR RKLHVTFKPE DDLVEIRYFT HDPDEELGHD SSQIRDVADV GGEGMMLKMQ 780 NQMMDVDEDD DAADHDRLVR FEPPSLVDFS TVPEEERLRN YAPYGGGKLQ VDSPERAVRD 840 QHEAGTLMAF YSSPSDVPPN PKEPVDPHNG VHTSTFKKFD LPEDAKYLSR ARQRKLAQPQ 900 AYYSKQSANT APNINFAALG QLFGTQQVQQ QVQVQQPPVA PSSGLDLQKI LASFQTMHPA 960 QQPPPSAPVM EFQAPPPQPI MPPAPAQPDI GAILAALQQS QAQVATSQQY NLHQPPASPF 1020 ETAERARSRD GPGEDPNAYQ LSNSDNEKKG WQERVYRTKV CHFWELGKCK KGDNCTYLHE 1080 YPAGYQPTAT SDD

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence

MVMDNAQLPR SDHSNNHHHH HHHHNEAFSG TSMFADSQQY HAYDDLFPNP VDHNNFAADP  60
SWPVDGFSGQ PQSRAPSWPS NNNNNNNNNA PSPTPPHLNA AAFARSHTNS PAQFAQNGFA  120
NYSAQQPYQY RPQQFDPALV APSASGQDYS SAFTRYGAAT QYGGTIAPRA LEHEVRPPVP  180
QRNSYASTDF PLNGLGVSRG PPLQNFVNQK DLIDSIPAGS LDAASGMIVI DANVLSQATN  240
SEHMGNYVHI GKDVFEFGVT RTPIPAYVPR KSRNELKRLA GGNQALIDKL GRKSAKKQKM  300
MVPNLSRTVK PVLTKPSDAS SEPIKYEGDS SSETDSSDDD DDDDDSSYIS DEDAGGSPLP  360
TKRPDSPKAA TEYDTIKALW RSKRKTVDSE SLRKGIVDFW EIVKTVRDRW KADQTALSDA  420
EEKKRTGELP LLRSRVKDQR DMMETAFKTA LKHGHKGILE LLGENPSLLY LCYQFLLDRW  480
KEDDANSTIA RAILELMAVL TTVDDKKLEK THLKKLFPKY ISKADAKTQW LVKKIMATSS  540
ANTKALPATG DVAIGAAPST TSATLTKNAD PKAPTGVKRA ASSTAEGSVH KKIVTGTTAS  600
GGLAPKPNGI VKKPVAPNEA GKINSAATSV VKAKTVSAKP SATGFFASLQ SATGKKTAPA  660
AAAKSATKIV EKKLATVSAS TAPKSTFSFA ETMANISKPK EPPKAAPKQE KELPPETADE  720
KKKRLRKEAR RKLHVTFKPE DDLVEIRYFT HDPDEELGHD SSQIRDVADV GGEGMMLKMQ  780
NQMMDVDEDD DAADHDRLVR FEPPSLVDFS TVPEEERLRN YAPYGGGKLQ VDSPERAVRD  840
QHEAGTLMAF YSSPSDVPPN PKEPVDPHNG VHTSTFKKFD LPEDAKYLSR ARQRKLAQPQ  900
AYYSKQSANT APNINFAALG QLFGTQQVQQ QVQVQQPPVA PSSGLDLQKI LASFQTMHPA  960
QQPPPSAPVM EFQAPPPQPI MPPAPAQPDI GAILAALQQS QAQVATSQQY NLHQPPASPF  1020
ETAERARSRD GPGEDPNAYQ LSNSDNEKKG WQERVYRTKV CHFWELGKCK KGDNCTYLHE  1080
YPAGYQPTAT SDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	721	732	KKKRLRKEARRK