PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914163.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 701aa MW: 76314.4 Da PI: 6.7828

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_023914163.1 278 PCPDFRK-GACRRGDMCEYAHG 298 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MNHLTVETED TFASLLDLAA NNDIEGFKRL IERDPSGIDE IGLWYGRKKG SKQMVNERRT 60 PLMVAATYGS IDVMKLILSL SAADVNRPCG HDKSTALHCA ASGGAVNAID AVKLLLVSGA 120 DPNLVDANGH RPVDLIVVPP KLQDVKLSLR ELLTTNGPCV EHNLTVLTGT LSMNSSPLSS 180 SPDNGSPSAS DFISSPTKMK FSDYSISSAS EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK 240 VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF 300 ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT AEELRPLYVS TGSAVPSPRS STSGATAMDF 360 AAAMSLLPGS PSSVSVMSPS AFTPPMSPSA NGMSHSGWPQ PNVPALHLPG SNFQSSRLRS 420 SLNARDIPAE DFDIDFDVQQ QQLINELSCL SQQSMSSNSL NRSGRFKSLT PSNLDDLFSS 480 ESLSPRYSDQ ALASAVFSPT HKSAVLNQFQ QQQQSMLSPI NTSFSPKNVD HPLLQASFGV 540 PSSGRMSPRN VEPISPMSSR MSMLAQRDKQ QQFRSLSSRE LGSNSASTVG SPVNSWSKWG 600 SSNGKPDWAV STDELGKHRR SSSFELGNNG EEPDLSWVQS LVKESPTDIK EKLATPVSSA 660 AATASSSEGS NMNSQIESVD HAVLGAWLEQ MQLDHLVAQQ N

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MNHLTVETED TFASLLDLAA NNDIEGFKRL IERDPSGIDE IGLWYGRKKG SKQMVNERRT  60
PLMVAATYGS IDVMKLILSL SAADVNRPCG HDKSTALHCA ASGGAVNAID AVKLLLVSGA  120
DPNLVDANGH RPVDLIVVPP KLQDVKLSLR ELLTTNGPCV EHNLTVLTGT LSMNSSPLSS  180
SPDNGSPSAS DFISSPTKMK FSDYSISSAS EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT AEELRPLYVS TGSAVPSPRS STSGATAMDF  360
AAAMSLLPGS PSSVSVMSPS AFTPPMSPSA NGMSHSGWPQ PNVPALHLPG SNFQSSRLRS  420
SLNARDIPAE DFDIDFDVQQ QQLINELSCL SQQSMSSNSL NRSGRFKSLT PSNLDDLFSS  480
ESLSPRYSDQ ALASAVFSPT HKSAVLNQFQ QQQQSMLSPI NTSFSPKNVD HPLLQASFGV  540
PSSGRMSPRN VEPISPMSSR MSMLAQRDKQ QQFRSLSSRE LGSNSASTVG SPVNSWSKWG  600
SSNGKPDWAV STDELGKHRR SSSFELGNNG EEPDLSWVQS LVKESPTDIK EKLATPVSSA  660
AATASSSEGS NMNSQIESVD HAVLGAWLEQ MQLDHLVAQQ N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	53	GRKKGSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein