PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910252.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 532aa MW: 58365 Da PI: 6.8372

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	449	471	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ff +G C+ Gd C+F H XP_023910252.1 449 RPLCKFFTSSGRCRDGDECTFRH 471 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MSKSFSFPPP PPPPPRARGD QENTGLSLAS NNSNRAPVTH RERGQGGSNR GRGSGRANVD 60 HVAHAHDSRQ QVVDPSARNS RSYHVHSNAS NLPPGSYVNP RFHSQHTGQR NENVRRPQTQ 120 AKHPSRTAAG HKRKLEALRT PQPDVVYPGP PVAPEVPNFG DALSHPNRHA NPPLASTKMV 180 PSTNAFGLIP VERDPHGDYL EGSDDDKEVD EEALFAELGD RLTFEHNGTV VVLSTVADIA 240 AWQHERKKNW PTKARMEEKD AENRAIGAER RRLLSAASIL NEPSAAMSER NIKRETTADA 300 STQHRTVALT SVGSDTKVEC MRQHLVEQSD KLELLRKKVA MSQERLDGHK AKQVADDERL 360 AETLARRPPV NGGSTKDNPK GNLSDEDTDA LSDSSVVSSD SDEERGNDPA RQAGPVQPLE 420 EEDPDNDDDD GPPEEASSKR SEKSSAESRP LCKFFTSSGR CRDGDECTFR HEQGPQSQRG 480 AVKLQYPPKA VPPASTSQRK GIFQRLAEQE QEENDRLVLQ VVKSLGKAGF FG

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MSKSFSFPPP PPPPPRARGD QENTGLSLAS NNSNRAPVTH RERGQGGSNR GRGSGRANVD  60
HVAHAHDSRQ QVVDPSARNS RSYHVHSNAS NLPPGSYVNP RFHSQHTGQR NENVRRPQTQ  120
AKHPSRTAAG HKRKLEALRT PQPDVVYPGP PVAPEVPNFG DALSHPNRHA NPPLASTKMV  180
PSTNAFGLIP VERDPHGDYL EGSDDDKEVD EEALFAELGD RLTFEHNGTV VVLSTVADIA  240
AWQHERKKNW PTKARMEEKD AENRAIGAER RRLLSAASIL NEPSAAMSER NIKRETTADA  300
STQHRTVALT SVGSDTKVEC MRQHLVEQSD KLELLRKKVA MSQERLDGHK AKQVADDERL  360
AETLARRPPV NGGSTKDNPK GNLSDEDTDA LSDSSVVSSD SDEERGNDPA RQAGPVQPLE  420
EEDPDNDDDD GPPEEASSKR SEKSSAESRP LCKFFTSSGR CRDGDECTFR HEQGPQSQRG  480
AVKLQYPPKA VPPASTSQRK GIFQRLAEQE QEENDRLVLQ VVKSLGKAGF FG