PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023908953.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 367aa    MW: 41942.7 Da    PI: 6.0034
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023908953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12186211126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_023908953.1 186 YQPDICKDYKETGYCGYGDSCKFMHD 211
                     66789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MADSGENQQP EQVCNFFRKP SRNKNIRKRT VDEEDEDDSK TEGSFLHSQK KTIKPDNKLY  60
FSTGSSKNKT STEAKEESEK PIFQFESSRE IQVEHDSRAT ATLETETDFS RDARALRERS  120
LKQAEEALKG KGKSSGDEKL YRGINGYTDY KAGFRREQTV ASEKAGGAHG PLRASAHIRV  180
SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ MEKEWDEAEK VRKRNLALGL  240
DDEDDGGVDP GEEDDDDDSL PFACFICRQP FVDAVVTKCK HYFCEHCALK HHTKNKKCFV  300
CNKPTLGIFN TAHEIRKRIA IEEEGLELYV DMVLGRAVYD VCTQMCHRGN ICGFLLLYND  360
EEVKRLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-164C3H family protein