PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023908888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 379aa MW: 42596.4 Da PI: 5.9872 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.6e-07 | 6 | 49 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++r C+ ++e + l+C+ ++ lC C e H+ Ht+ XP_023908888.1 6 QKRLCDYCSEATALLYCRADSAKLCFLCDREVHSTnqlfskHTR 49 6789*****************************66788888886 PP | |||||||
2 | zf-B_box | 26.2 | 1.7e-08 | 50 | 93 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 r C+ +++ ++++fC + ++ lC++C e H + H+++p XP_023908888.1 50 SRLCDSCDSSPASIFCSTECSVLCQNCDWERH-SlslsqvHNRRP 93 689*****************************.658888888877 PP | |||||||
3 | CCT | 61.5 | 2.8e-21 | 325 | 367 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k XP_023908888.1 325 RDSALSRYKEKKKTRRYEKHIRYESRKVRAESRIRIKGRFAKM 367 899**************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence |
MSPQIQKRLC DYCSEATALL YCRADSAKLC FLCDREVHST NQLFSKHTRS RLCDSCDSSP 60 ASIFCSTECS VLCQNCDWER HSLSLSQVHN RRPLEGFTGC PSVHELSGIV GFEETGHKAL 120 FLKDESTGDG DDFDGLSDFL VWDTPCAVSL DDLISSTSSE HDFQAMGVPP LPKNRNAACG 180 LYKDEIINQL RELVKLEPNL NCENVDAEPL TGFQPLLSEQ NVQQGDMVTG FAHNAEPFVF 240 PKFEASAFQC CTGSSEAANH FFLPNSSTRS YLEESHVVPD KHADISCSVT HANDGSEGHS 300 RYPVKSETSS AFQRVASHEL NSQERDSALS RYKEKKKTRR YEKHIRYESR KVRAESRIRI 360 KGRFAKMDTT GETNYYLYM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47890.1 | 4e-87 | CO-like family protein |