PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023906834.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 429aa MW: 47916.1 Da PI: 6.2636

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023906834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.1	8.9e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v XP_023906834.1 16 ARACDSCVRKRARWYCPADDAFLCQVCDSSVHSAnqlarrHERV 59 578*****************************657788888876 PP
2	CCT	68	2.5e-23	373	416	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_023906834.1 373 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 416 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MICDKNVANA VGGKTARACD SCVRKRARWY CPADDAFLCQ VCDSSVHSAN QLARRHERVR 60 LKTASFKSSD AAVKNSVPSW HRGFTRKART PRHGKPVNYQ TPKSKEEPLR NPFPIVPEVG 120 ADEISHEENE EQLLYRVPIF DPFVAELCTP TTPKEAVAAV NSSPNGSETK VLLANCGHDV 180 DNLHKFIPSD MDLAEFAADV ESLLGRGLEN ECFGMEELGL MDCKEKVMKE GCLASGRVKV 240 EEEVGTESVT ACLVDDSEID MMREPFELSF DYDSPVTCEE EDEKATVMRN IDGGGYEAED 300 KKNKKKILLR LDYEAVIAAW ASQGSPWTNG DRPDFDPDEC WPDCMGTCSI EFHHPYGDFG 360 GTGGNPAIAD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRASFAS 420 GPAFPLLSK

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MICDKNVANA VGGKTARACD SCVRKRARWY CPADDAFLCQ VCDSSVHSAN QLARRHERVR  60
LKTASFKSSD AAVKNSVPSW HRGFTRKART PRHGKPVNYQ TPKSKEEPLR NPFPIVPEVG  120
ADEISHEENE EQLLYRVPIF DPFVAELCTP TTPKEAVAAV NSSPNGSETK VLLANCGHDV  180
DNLHKFIPSD MDLAEFAADV ESLLGRGLEN ECFGMEELGL MDCKEKVMKE GCLASGRVKV  240
EEEVGTESVT ACLVDDSEID MMREPFELSF DYDSPVTCEE EDEKATVMRN IDGGGYEAED  300
KKNKKKILLR LDYEAVIAAW ASQGSPWTNG DRPDFDPDEC WPDCMGTCSI EFHHPYGDFG  360
GTGGNPAIAD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRASFAS  420
GPAFPLLSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	400	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-113	CO-like family protein