PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904681.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 385aa MW: 42675.2 Da PI: 6.2269

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1.1e-06	21	62	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + + +C+ ++ +lC C +H H++ XP_023904681.1 21 RICDTCRSAACTVYCRADSAYLCTGCDARIHAAnrvasrHER 62 79****99*******************55567777765 PP
2	zf-B_box	28.3	3.8e-09	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC C +H+ H +vp+ XP_023904681.1 63 VWVCEACERAPAAFVCKADAASLCTACDADIHSAnplarrHHRVPI 108 689*****************************66899999877775 PP
3	CCT	70.3	4.8e-24	316	359	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_023904681.1 316 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 359 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MLKLENNDGG SSSGGDNNWA RICDTCRSAA CTVYCRADSA YLCTGCDARI HAANRVASRH 60 ERVWVCEACE RAPAAFVCKA DAASLCTACD ADIHSANPLA RRHHRVPILP ISGNLHGPHA 120 VGAMSGTEER FVHQDGDEMI DDEDEDEAAS WLLLNPVKVN NNNNNNNNNN QNNGFLFGGE 180 VDEYLDLVEY NSCAENHFND QYSQQQQQQQ HYCVPQKSYG GDSVVPVQCG EAKGQPHHLH 240 QQNFQLGLDY ESSKAAYSYN GSISHSVSVS SMDVGVVPES TMSDISISHS RPPKGTIDLF 300 SGSTIQIPAQ LTPLDREARV LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD 360 VEVEVDQMFS TTLMAETGYS IVPSF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MLKLENNDGG SSSGGDNNWA RICDTCRSAA CTVYCRADSA YLCTGCDARI HAANRVASRH  60
ERVWVCEACE RAPAAFVCKA DAASLCTACD ADIHSANPLA RRHHRVPILP ISGNLHGPHA  120
VGAMSGTEER FVHQDGDEMI DDEDEDEAAS WLLLNPVKVN NNNNNNNNNN QNNGFLFGGE  180
VDEYLDLVEY NSCAENHFND QYSQQQQQQQ HYCVPQKSYG GDSVVPVQCG EAKGQPHHLH  240
QQNFQLGLDY ESSKAAYSYN GSISHSVSVS SMDVGVVPES TMSDISISHS RPPKGTIDLF  300
SGSTIQIPAQ LTPLDREARV LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD  360
VEVEVDQMFS TTLMAETGYS IVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-122	CO-like family protein