PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023901258.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 556aa MW: 63624.3 Da PI: 9.7735

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023901258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.1	1.7e-09	513	534	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lCr++a+ G C++Gd+CkF H+ XP_023901258.1 513 QLCRYYAQ-GRCHFGDSCKFLHD 534 69****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MAVSEHSTEY PFAEEKEEYS ESEGSHSDQD SDDSDKDPSY TILEKTSAKF SNLSIKNNKK 60 SKARIVEDND MDCEGDSNGV EVVVPELDEK DKKSYEEVQK IIEAGQLEKL KVDQCKVYLR 120 KNGLRLTGNK DTLIQRIKEH LEILNGGGEN KYPASSFVLN CKGDACTGDI VMFEQNVYEM 180 FNIASRSASG PPCGKRIVAG RIVKESYGAA KQQHTFTIEV LWSKGEKPLP PLHPLLIKGR 240 NLYRLKTLRQ RWEDEGKRQK VLMEKHSRGF VARSDRESRI QEKEKKKMRI SKKETNRNQS 300 QFNSISTAKS AIQPPQSDLL VNSRKPTFQP SQSGQNYNSE KSGFGPLKLD PSVNSGKPAN 360 SQFVAFLDPG KLDMRPQQLG SFTHLGRPTE QTRVALFSEP RIAATQPQQQ TNTTKSDYHH 420 QQPSQSFVES KRASNIERMY SGHQAYIQSN NYQAHSHKYP NTYGTRGLSD RTYNRQPLKS 480 MNHFPPRSPP PLTSMNHFPP MSPPRRQGHM QQQLCRYYAQ GRCHFGDSCK FLHDRRREYG 540 QRREDRWPCD QRNLGR

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MAVSEHSTEY PFAEEKEEYS ESEGSHSDQD SDDSDKDPSY TILEKTSAKF SNLSIKNNKK  60
SKARIVEDND MDCEGDSNGV EVVVPELDEK DKKSYEEVQK IIEAGQLEKL KVDQCKVYLR  120
KNGLRLTGNK DTLIQRIKEH LEILNGGGEN KYPASSFVLN CKGDACTGDI VMFEQNVYEM  180
FNIASRSASG PPCGKRIVAG RIVKESYGAA KQQHTFTIEV LWSKGEKPLP PLHPLLIKGR  240
NLYRLKTLRQ RWEDEGKRQK VLMEKHSRGF VARSDRESRI QEKEKKKMRI SKKETNRNQS  300
QFNSISTAKS AIQPPQSDLL VNSRKPTFQP SQSGQNYNSE KSGFGPLKLD PSVNSGKPAN  360
SQFVAFLDPG KLDMRPQQLG SFTHLGRPTE QTRVALFSEP RIAATQPQQQ TNTTKSDYHH  420
QQPSQSFVES KRASNIERMY SGHQAYIQSN NYQAHSHKYP NTYGTRGLSD RTYNRQPLKS  480
MNHFPPRSPP PLTSMNHFPP MSPPRRQGHM QQQLCRYYAQ GRCHFGDSCK FLHDRRREYG  540
QRREDRWPCD QRNLGR