PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896194.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 1095aa MW: 120408 Da PI: 8.2961

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.1e-06	1058	1081	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 y+t+ C+f+ G Ck Gd+C++ H XP_023896194.1 1058 YRTKVCHFWEL-GKCKKGDNCTYLH 1081 89*******.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence
MDNQQMQRSD HSHNHNEGFS HNSIFADSQQ YHAYDDLFPN ALDHNNFAAD PNWASDNFSG 60 QSQSRASAWP SNNHSNNNTA QSPGPSHHVN AASFARSHTN SPAQFAQNGF AGYPTQQTYQ 120 YRPQQFDPAL VATATTGQDF NAAFTRYGSQ AQYGATIAPQ ALEHEARPPV PQRSSYATTD 180 FSSNGLAISR QPNFQNVVIA QDLINSIPAG HLDAARGMVI IDADILSKAT NSEHMGNYVN 240 IGKDVFEFGV ARTPIPAYVP RKSRNELKRM AAGDPALMDK LHRKSAKKQR MIMPTFSKSI 300 KSATKSPGDP VESVKYEGDS PSETDSSDDD GDEDDSSYES DDDVGVSPLP IKRPDSPKAA 360 TEYDTIKALW RGKRKTLDSE SLRKGIVDFW EIVKTVRDRW KADQTALADA EEKKRIGELP 420 LLRSRVKDQR DMMETAFKAA LKYGHKSILE LLGENPSLLY LCYQFLLDRW KEDDANSAIA 480 RAILDLMTVL TTVDDKKLEK THLKKLFPKY ISKADAKTQW LVKKIMATSS ANTKAMPAAS 540 DATASATPSA SSTVAQKTTD AKPLTGLKRP ASHVAEGSVH KKLITGTATS GGVATRPGGI 600 TKKSTTASEG GKISAAGPPV LKAKTVSVKP SATGFFASLQ SATGKKSVPP AAAKSVIKTA 660 EKKSNTAPQS AAPKSTFSFA ETMANISKPK ELPKAPPKPE KELPSETADE KTKRLRKEAR 720 RKLHVTFKAE DELVDIRYFT HDPDEELGHD SSQIRDVADV GGEGMMLKMQ NQMMDVDDED 780 EGTDQSRLVK YEPPSLIDFS TVPEEERLRN YAPHGGGQLQ VNSAERAVRD QYEAGTLMAF 840 YSSPSDVPPN PREPVDPQNG LHTSTFKKFD HPEDTKYLSR ARQRRLAQPQ AYYSKQTTSI 900 APNIDFAALG QLFGAQQHQQ QPQQQHQQHH QQNQQMQQPP VAQPAGLDLQ KILASFQSMP 960 PVRQQAQAVP VMDFQAPPPQ SIMPAAPAQP DIGAILAALQ QSQAQAASAQ PHAMHQHQAS 1020 SMENAERFRL REGLGDNANA PHLSSSDNEK KGWQERVYRT KVCHFWELGK CKKGDNCTYL 1080 HEYPAGHQPT MKTDV

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence

MDNQQMQRSD HSHNHNEGFS HNSIFADSQQ YHAYDDLFPN ALDHNNFAAD PNWASDNFSG  60
QSQSRASAWP SNNHSNNNTA QSPGPSHHVN AASFARSHTN SPAQFAQNGF AGYPTQQTYQ  120
YRPQQFDPAL VATATTGQDF NAAFTRYGSQ AQYGATIAPQ ALEHEARPPV PQRSSYATTD  180
FSSNGLAISR QPNFQNVVIA QDLINSIPAG HLDAARGMVI IDADILSKAT NSEHMGNYVN  240
IGKDVFEFGV ARTPIPAYVP RKSRNELKRM AAGDPALMDK LHRKSAKKQR MIMPTFSKSI  300
KSATKSPGDP VESVKYEGDS PSETDSSDDD GDEDDSSYES DDDVGVSPLP IKRPDSPKAA  360
TEYDTIKALW RGKRKTLDSE SLRKGIVDFW EIVKTVRDRW KADQTALADA EEKKRIGELP  420
LLRSRVKDQR DMMETAFKAA LKYGHKSILE LLGENPSLLY LCYQFLLDRW KEDDANSAIA  480
RAILDLMTVL TTVDDKKLEK THLKKLFPKY ISKADAKTQW LVKKIMATSS ANTKAMPAAS  540
DATASATPSA SSTVAQKTTD AKPLTGLKRP ASHVAEGSVH KKLITGTATS GGVATRPGGI  600
TKKSTTASEG GKISAAGPPV LKAKTVSVKP SATGFFASLQ SATGKKSVPP AAAKSVIKTA  660
EKKSNTAPQS AAPKSTFSFA ETMANISKPK ELPKAPPKPE KELPSETADE KTKRLRKEAR  720
RKLHVTFKAE DELVDIRYFT HDPDEELGHD SSQIRDVADV GGEGMMLKMQ NQMMDVDDED  780
EGTDQSRLVK YEPPSLIDFS TVPEEERLRN YAPHGGGQLQ VNSAERAVRD QYEAGTLMAF  840
YSSPSDVPPN PREPVDPQNG LHTSTFKKFD HPEDTKYLSR ARQRRLAQPQ AYYSKQTTSI  900
APNIDFAALG QLFGAQQHQQ QPQQQHQQHH QQNQQMQQPP VAQPAGLDLQ KILASFQSMP  960
PVRQQAQAVP VMDFQAPPPQ SIMPAAPAQP DIGAILAALQ QSQAQAASAQ PHAMHQHQAS  1020
SMENAERFRL REGLGDNANA PHLSSSDNEK KGWQERVYRT KVCHFWELGK CKKGDNCTYL  1080
HEYPAGHQPT MKTDV