PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023891878.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 324aa MW: 36527.7 Da PI: 4.8574

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023891878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.7	4.8e-08	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+e+e+ ++ + C+ + lC +C +e+H+ H++vp+ XP_023891878.1 59 VLVCSECENAPAAFTCKADAASLCISCDVEIHSAnaiaccHNRVPV 104 568*****************************66999999999986 PP
2	CCT	65.4	1.7e-22	259	301	2	44
CCT 2 eaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 ea++l+Y+eKrk RkFeKkirY+sRKa+Ae+RpRv+GrF++++ XP_023891878.1 259 EAKVLKYREKRKARKFEKKIRYASRKAYAETRPRVRGRFARRT 301 799*************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MFKVDSVGDG YPCNWPRTCD ACHAAACNLY CHTDSAYLCF SCDECIHAAN PQVLQHHRVL 60 VCSECENAPA AFTCKADAAS LCISCDVEIH SANAIACCHN RVPVSPLTDL LPLPAPMFDV 120 GNETVAYKTN EEIDEAETDS FLLLNPENTE NQTNSELMNS EAIEYLEPVE YDSSIKLQYQ 180 DEYSQQQSYS AHKGKNISDI IVPVPSVEAP KIQQQQQQKQ EQHNISFNGQ YEASRAAFIN 240 TSSKQFTCDA TSINSNEPEA KVLKYREKRK ARKFEKKIRY ASRKAYAETR PRVRGRFARR 300 TDIELEEDQL FSIEEYGYAI VPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	3e-50	CO-like family protein