PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023884362.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 1647aa MW: 179368 Da PI: 4.3672

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023884362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8.2e-06	1624	1647	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C + H+ XP_023884362.1 1624 GQRVCK-FHESGHCKKGASCDYLHP 1647 6789.***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1647 aa Download sequence
METEEDEASN LNQPSLPLQE EDSAAIVCDP LEAEGPKNSE PQWAPEPENE PESESASESH 60 IVGASESQQS PPSQVAGEEA LEVADTDLGT GEKVVSDVAE KVEKEEEEEE DQGESNTVAE 120 VVEEKEEAQD VADVAVEETE VTDLAKETTN LASPAAEDTD FLGPVVAEET ESAETAVAEE 180 TDLAEPEAAV ETDLKETAVA EPVAAADDTG LEEPAAVEET ALVEPTRVEE TDLVELAVAE 240 ETDLVEPKVE EESDVAVAET DLAEEMDTIE PAVAEETELV APVDEMEDAE VEAEAVEEAN 300 VGADLTEETV EAEEHLVEEE EEEAMETEDN VAEETTDAEE AEAAEEEVEM AEETTEAEET 360 EAAEEMEVVE AGRTSGGKRK RGKSTTRAAA ARASTRKRVE EDVCFICFDG GDLVLCDRRG 420 CPKAYHPSCI NRDEAFFRAK GRWNCGWHLC SSCGKNANYM CYTCTFSLCK GCIKDAVILC 480 VRGNKGFCET CMKTVLLIEH NLQGNKDMGQ VDFDDKSSWE YLFKDYWIDL KERLSLTLDE 540 LNQAKNPWKG GSDVPTGKQE SPDELYDANN DERSDSDSSS DNIETSNSKR RRGKRRLKPR 600 TKVSNSSASA ATGSGGPSMV DNAEWASKEL LEFVMHMKNG DRSVLSQFDV QALLLEYIKR 660 NKLRDPRRKS QIICDARLES LFGKPRVGHF EMLKLLESHF LIKEDSQADD LQGSVVDTET 720 SQLETDGNSD SLVKASKDKK RKTRKKGDER GPQSNLEDFA AIDIHNINLI YLRRNLVEEL 780 IEDMEKFQDK VVGSFVRIRI SGSGQKQDLY RLVQVAGTCK AAEPYKVGKR MTDTLLEILN 840 LNKTEIISID IISNQEFTED ECKRLRQSIK CGFINRLTVG DLQEKAMALQ EARVKDWLET 900 EIVRLSHLRD RASEKGRRKE LRECVEKLQL LKTPEERQRR LEEIPEIHAD PNMDPSYESE 960 EDGGETDDKK QETYMRPRGA GFGRRPREPV SPQTGGPAFS DSWSGTRNYS TGNRDLTRNM 1020 SNKGFSHKGD DTTGVGEILN EWNQGRDRET QQINSWEKQK IAASLEIDAS KTQSAVKSES 1080 TSAAAEASLS TTVAQSAVTI NETEKMWHYK DPSGKVQGPF SMVQLRKWNN TGYFPVDLRI 1140 WRITEKQDNS LLLTDALDGK FQLDPPLVDN SFLKAQGVHN LNLPSSYSSK PHGAPLQHGI 1200 EGQVGERSNF DQNRAALSSQ SPAGMLATLS VEVPKISIDG RSSNYQNDST NLPSPTPQST 1260 TSATKGQPYE NKWFQNPIQP ADSVMGAGSF SAGNGGLHPP AAVIPESVLR VSESNGASSH 1320 LGVTPIPKPE KSMLAGSTDT LQMHAQSISP GADMKNSVTN FQNLVQSVAN NNHPVETQGW 1380 GGASSQKVEP NNLANMPAQP ATHGHWGNSQ SVHNSATSFS TGNPVGNFPS AGFSGLPPSD 1440 SWRHPVPVNQ SNIQPPAPPP QTWGMGVAEN QTAGTRPENQ NTSWGPMAGN QNMPWGGLVP 1500 ANANMNWGAS GPGPVPGNAT AGWVAPVQTP GNAGPGWVPP NQVPPPVNAN PGWVASGQGP 1560 PPRNANPGWA APTGNAGNNG DRFTNQRDRV SHGGDSGHGG GKPWNRQSSF GGGGGGGSRP 1620 SFKGQRVCKF HESGHCKKGA SCDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1647 aa Download sequence

METEEDEASN LNQPSLPLQE EDSAAIVCDP LEAEGPKNSE PQWAPEPENE PESESASESH  60
IVGASESQQS PPSQVAGEEA LEVADTDLGT GEKVVSDVAE KVEKEEEEEE DQGESNTVAE  120
VVEEKEEAQD VADVAVEETE VTDLAKETTN LASPAAEDTD FLGPVVAEET ESAETAVAEE  180
TDLAEPEAAV ETDLKETAVA EPVAAADDTG LEEPAAVEET ALVEPTRVEE TDLVELAVAE  240
ETDLVEPKVE EESDVAVAET DLAEEMDTIE PAVAEETELV APVDEMEDAE VEAEAVEEAN  300
VGADLTEETV EAEEHLVEEE EEEAMETEDN VAEETTDAEE AEAAEEEVEM AEETTEAEET  360
EAAEEMEVVE AGRTSGGKRK RGKSTTRAAA ARASTRKRVE EDVCFICFDG GDLVLCDRRG  420
CPKAYHPSCI NRDEAFFRAK GRWNCGWHLC SSCGKNANYM CYTCTFSLCK GCIKDAVILC  480
VRGNKGFCET CMKTVLLIEH NLQGNKDMGQ VDFDDKSSWE YLFKDYWIDL KERLSLTLDE  540
LNQAKNPWKG GSDVPTGKQE SPDELYDANN DERSDSDSSS DNIETSNSKR RRGKRRLKPR  600
TKVSNSSASA ATGSGGPSMV DNAEWASKEL LEFVMHMKNG DRSVLSQFDV QALLLEYIKR  660
NKLRDPRRKS QIICDARLES LFGKPRVGHF EMLKLLESHF LIKEDSQADD LQGSVVDTET  720
SQLETDGNSD SLVKASKDKK RKTRKKGDER GPQSNLEDFA AIDIHNINLI YLRRNLVEEL  780
IEDMEKFQDK VVGSFVRIRI SGSGQKQDLY RLVQVAGTCK AAEPYKVGKR MTDTLLEILN  840
LNKTEIISID IISNQEFTED ECKRLRQSIK CGFINRLTVG DLQEKAMALQ EARVKDWLET  900
EIVRLSHLRD RASEKGRRKE LRECVEKLQL LKTPEERQRR LEEIPEIHAD PNMDPSYESE  960
EDGGETDDKK QETYMRPRGA GFGRRPREPV SPQTGGPAFS DSWSGTRNYS TGNRDLTRNM  1020
SNKGFSHKGD DTTGVGEILN EWNQGRDRET QQINSWEKQK IAASLEIDAS KTQSAVKSES  1080
TSAAAEASLS TTVAQSAVTI NETEKMWHYK DPSGKVQGPF SMVQLRKWNN TGYFPVDLRI  1140
WRITEKQDNS LLLTDALDGK FQLDPPLVDN SFLKAQGVHN LNLPSSYSSK PHGAPLQHGI  1200
EGQVGERSNF DQNRAALSSQ SPAGMLATLS VEVPKISIDG RSSNYQNDST NLPSPTPQST  1260
TSATKGQPYE NKWFQNPIQP ADSVMGAGSF SAGNGGLHPP AAVIPESVLR VSESNGASSH  1320
LGVTPIPKPE KSMLAGSTDT LQMHAQSISP GADMKNSVTN FQNLVQSVAN NNHPVETQGW  1380
GGASSQKVEP NNLANMPAQP ATHGHWGNSQ SVHNSATSFS TGNPVGNFPS AGFSGLPPSD  1440
SWRHPVPVNQ SNIQPPAPPP QTWGMGVAEN QTAGTRPENQ NTSWGPMAGN QNMPWGGLVP  1500
ANANMNWGAS GPGPVPGNAT AGWVAPVQTP GNAGPGWVPP NQVPPPVNAN PGWVASGQGP  1560
PPRNANPGWA APTGNAGNNG DRFTNQRDRV SHGGDSGHGG GKPWNRQSSF GGGGGGGSRP  1620
SFKGQRVCKF HESGHCKKGA SCDYLHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	589	597	KRRRGKRRL
2	589	598	KRRRGKRRLK
3	590	598	KRRRGKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein