PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883775.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 423aa MW: 46868.5 Da PI: 5.0802

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.9e-07	46	85	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee..Hkg..Htv 39 C+++++++++ C d+++ lC+ C ++ ++ H++ XP_023883775.1 46 LLCDKCNSQPAIVRCMDDKMSLCQGCDWNGneCSRlgHRR 85 57************************98776655555655 PP
2	CCT	62.2	1.6e-21	367	410	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+k+R F K+irY+sRKa+A++R+RvKGrFvkq XP_023883775.1 367 RDKAKMRYNEKKKSRTFGKQIRYASRKARADTRKRVKGRFVKQG 410 899***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEPLCEFCGV LRAVVYCKSD LARLCLHCDG CVHSANSLSR RHMRSLLCDK CNSQPAIVRC 60 MDDKMSLCQG CDWNGNECSR LGHRRQSLNC YTGCPSLTEL SRIWSSLLDS SSSSNFNSGW 120 EYMTTQPMSE NCINNCLEQR DNEGSLELVA TKPNEIEPCS KFESWTGLSS LIPTNPNYMP 180 YCRDQAPFFS EESNLPKESL NFKDLVDTDD LCEGLNIDDV SLKNGEIFGC PPGSTRYQFE 240 DGGMECLSME KNLSVTESNG PIESALEASS SGQQDCMGFQ SSHVGGSASM MPVSGSPNCL 300 LLNPTHTRNI NLGFPTGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLT VESPWESNLE 360 ASCPQARDKA KMRYNEKKKS RTFGKQIRYA SRKARADTRK RVKGRFVKQG EVYDYDPLTT 420 SDF

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEPLCEFCGV LRAVVYCKSD LARLCLHCDG CVHSANSLSR RHMRSLLCDK CNSQPAIVRC  60
MDDKMSLCQG CDWNGNECSR LGHRRQSLNC YTGCPSLTEL SRIWSSLLDS SSSSNFNSGW  120
EYMTTQPMSE NCINNCLEQR DNEGSLELVA TKPNEIEPCS KFESWTGLSS LIPTNPNYMP  180
YCRDQAPFFS EESNLPKESL NFKDLVDTDD LCEGLNIDDV SLKNGEIFGC PPGSTRYQFE  240
DGGMECLSME KNLSVTESNG PIESALEASS SGQQDCMGFQ SSHVGGSASM MPVSGSPNCL  300
LLNPTHTRNI NLGFPTGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLT VESPWESNLE  360
ASCPQARDKA KMRYNEKKKS RTFGKQIRYA SRKARADTRK RVKGRFVKQG EVYDYDPLTT  420
SDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-104	CO-like family protein