PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023874390.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family CO-like
Protein Properties Length: 329aa    MW: 36395.7 Da    PI: 6.1755
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023874390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.71.2e-08436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++lfC+ ++ +lC  C +++H  
  XP_023874390.1  4 KLCDSCKSATATLFCRADSAFLCVGCDSKIHAA 36
                    68*****************************54 PP
2zf-B_box27.56.6e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_023874390.1 46 VWVCEVCEQAPAHVTCKADAAALCVSCDRDIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT70.54.3e-24268311144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_023874390.1 268 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 311
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MASKLCDSCK SATATLFCRA DSAFLCVGCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV SCDRDIHSAN PLARRHERVP VTPFYESVTV KAGAVNFLEE RYFSDVEGDA  120
DVSREEAEAA SWLLPNPNNK VMESTDLNTG QFLLPEVDPY LDLEYGPVDP KLEAQEQNSS  180
GTDGVVPVQS KNAQPPLHND HCFDMDFSAS KPYSYGYNTQ CVSQSVSSSS LDVGVVPDGS  240
TVTEISDSYN KPITDLANRA VQISAADREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR  300
PRIKGRFAKR TDVEVDVERI YGYGVVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-142CO-like family protein