PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026456503.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

NF-YC

Protein Properties

Length: 265aa MW: 29623.3 Da PI: 6.0771

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026456503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	175	7.7e-55	80	182	2	101
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv XP_026456503.1 80 LQTFWASQyqeIEHTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 174 89**998899******************************************************************************* PP NF-YC 94 divprdel 101 divpr++l XP_026456503.1 175 DIVPREDL 182 ***987 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MDQQGHGQPP AVGMVASAGQ MPYGTAQYPS NQIIGAPPVG SIQSPGQTAG FSASQAQLVQ 60 HQLAYQQAHQ QQQQQLQQHL QTFWASQYQE IEHTTDFKNH SLPLARIKKI MKADEDVRMI 120 AAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE 180 DLKEEGIAMP RAGPVPVGGP SEALSYYYPP QVGAAGMMMG KPVLDPTLYG QQSHPYMPQQ 240 VWPQPPAQQQ QQQQQQQQQQ QQQDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	8e-71	NF-YC family protein