PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026454073.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

Trihelix

Protein Properties

Length: 323aa MW: 36406.4 Da PI: 6.73

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026454073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.9	8.4e-16	37	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt+ + +Liea ++ +l+rg+l++++W+ev++ + + f+r+ +qCk++++ ++k+yk +k + s++p+fd+l+ XP_026454073.1 37 CWTEGATAVLIEAWGNRYLELNRGNLRQKDWKEVADSVnvyhikqGIKNFSRTDIQCKNRIDTIKKKYKSVKSKPNP------SQWPFFDRLH 123 7***************************************98888899*****************998886......68****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MENQKVQGVA HTTATTTTNS RAFHHYNGSA YGGREDCWTE GATAVLIEAW GNRYLELNRG 60 NLRQKDWKEV ADSVNVYHIK QGIKNFSRTD IQCKNRIDTI KKKYKSVKSK PNPSQWPFFD 120 RLHSLIGANF SPVNKKLASS SSSPQPIHYR HPGSGGGLKN PNPNLGMYSG GGMSKKARLD 180 DGEYSDSSEG EDEDGYDDSE GEGEGEGREE EVEVEAEELE RGGGRKRRGG GEDGGGVGEG 240 YRELAKEVVK FGKMYERIEC SKQQQMMELE KQRMEFTKEI EFQRMQMFMD AQLKVEKRKR 300 PNHGGESLGF DPLLFFSLSS FQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	231	GGGRKRRGGG
2	223	232	GGGRKRRGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	9e-32	Trihelix family protein