PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026453990.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 790aa MW: 89782 Da PI: 8.3256

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026453990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	72	91	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++Cgk sr+ L++H+ XP_026453990.1 72 FRCNYCGKEMSRRCRLQNHL 91 89*****************8 PP
2	zf-C2H2	12.5	0.00045	143	161	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 kC++Cgk ++ + Lk+H+ XP_026453990.1 143 KCNYCGKEVTTCYRLKNHL 161 7*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence
MNLEDKETLN CCCTSPFFFL WHPQIHTVKS LVTVKGWNNK FGSRTSQFRR MATPTVVIDD 60 HCTVVDREKR RFRCNYCGKE MSRRCRLQNH LAGIREKVLP CDEVPAEVRA QMKNEIVRRK 120 KAVAYTSSND HCTLVDEKKK RVKCNYCGKE VTTCYRLKNH LAGIRENVLP CDEVPEKVRA 180 RMRNEIMRRK KADANTSSND PCKQNGSLHE SSQPSSKKRK HCTTIESGLK EKDENTQSLI 240 DPKQLNARDA GKIAKVAEDS SSRQIQRCIG RFFFENGIDF SAANSPYFQK MIRALIGCGS 300 VVYKVPSCDD LKGWILQEEL KASQEHVREI VDSWGTTGCS ILLDGWTDGK GRDLINFVVD 360 SPKGPIFMKS ADVSDIVGDV DAMIALLIGV IEEVGVQNVV QIVSYTTLGS VDVAGKKLTE 420 KYRTISWTVC ASHCIGLILD KIAMLDPWRG VLGKAKDIIK FICSHEIVLK LTRKHTFGLD 480 IVSSRRIGSL TPFLMLERIE SQKMNLKNMF SSLEWKKSTL ASTADGMQVV DLVSGESSFW 540 TEAQMLLKGS IPLIRALHLI SGGDSKPQMG YIYETMKQVK EQIKEEFKDN ETKYQPFWTV 600 IDAIWNNQLH KPIHSAAYIL NPSLFYCVDF NDDAEIKDGL SHCIEQMVED KRARYLTLLQ 660 LDDYMQTSGT FGDGNAIDQR MTISPEKWWS LYGVQCPELQ NFAIRILSQT CTGALRYGLK 720 RSLSEQLHMN GRNRVEQKRL NDLTFVHHNL RLQNAVSISK TDYRDIFLEE TDHPVYEWVG 780 GGDVKESVAE

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence

MNLEDKETLN CCCTSPFFFL WHPQIHTVKS LVTVKGWNNK FGSRTSQFRR MATPTVVIDD  60
HCTVVDREKR RFRCNYCGKE MSRRCRLQNH LAGIREKVLP CDEVPAEVRA QMKNEIVRRK  120
KAVAYTSSND HCTLVDEKKK RVKCNYCGKE VTTCYRLKNH LAGIRENVLP CDEVPEKVRA  180
RMRNEIMRRK KADANTSSND PCKQNGSLHE SSQPSSKKRK HCTTIESGLK EKDENTQSLI  240
DPKQLNARDA GKIAKVAEDS SSRQIQRCIG RFFFENGIDF SAANSPYFQK MIRALIGCGS  300
VVYKVPSCDD LKGWILQEEL KASQEHVREI VDSWGTTGCS ILLDGWTDGK GRDLINFVVD  360
SPKGPIFMKS ADVSDIVGDV DAMIALLIGV IEEVGVQNVV QIVSYTTLGS VDVAGKKLTE  420
KYRTISWTVC ASHCIGLILD KIAMLDPWRG VLGKAKDIIK FICSHEIVLK LTRKHTFGLD  480
IVSSRRIGSL TPFLMLERIE SQKMNLKNMF SSLEWKKSTL ASTADGMQVV DLVSGESSFW  540
TEAQMLLKGS IPLIRALHLI SGGDSKPQMG YIYETMKQVK EQIKEEFKDN ETKYQPFWTV  600
IDAIWNNQLH KPIHSAAYIL NPSLFYCVDF NDDAEIKDGL SHCIEQMVED KRARYLTLLQ  660
LDDYMQTSGT FGDGNAIDQR MTISPEKWWS LYGVQCPELQ NFAIRILSQT CTGALRYGLK  720
RSLSEQLHMN GRNRVEQKRL NDLTFVHHNL RLQNAVSISK TDYRDIFLEE TDHPVYEWVG  780
GGDVKESVAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	141	RRKKAVAYTSSNDHCTLVDEKKKR
2	119	142	RRKKAVAYTSSNDHCTLVDEKKKR
3	179	191	RARMRNEIMRRKK
4	188	220	RRKKADANTSSNDPCKQNGSLHESSQPSSKKRK