PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026449335.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 577aa MW: 64294.9 Da PI: 8.4494

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026449335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_026449335.1 91 FVCEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	12.5	0.00044	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_026449335.1 168 WKCEKCSKKYAVQSDWKAHSKTC 190 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MKGLILQQQQ QQLLVEENMS SNLTNTTTSA ASGEGILSSS LSPHNQSITS TTLTSSQTPS 60 VKRKRSLPGN PDPDSEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRNNKEVIKK KVYVCPEVNC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ 180 SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EETARTPTIS IINPLQQHQQ 240 LQPQYFHAQQ QQQHYSLIRP EMPTWLSCPQ PIELSTSSPS MYSTRFEQDQ YSQQQTPSHE 300 TEQHQSKNYQ QQISSPSAAA SSAHMSATAL LQKAALMGAT ISKPSSSSAA TASLMNNRVL 360 QPHHSHMSSS NGNNNPTSTT SVTTTETGFG LGLSSHEEDI ENGSSDNNNN SNSFVPDHGL 420 TSFDDDHNNS TKAAMTSGNF MDHHISAQTQ QQLQDMMNSL SSASGGFDMS SSSFGHHHHQ 480 QGFDSTRRSS NESRASSTTT TTKTKTPKQN DGMTRDFLGL RAFSHADILN MNMNMNIGDG 540 NKNFDHHLQQ QCTSAVSPHH FDHHQQVQNQ NTKSWQQ

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MKGLILQQQQ QQLLVEENMS SNLTNTTTSA ASGEGILSSS LSPHNQSITS TTLTSSQTPS  60
VKRKRSLPGN PDPDSEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRNNKEVIKK KVYVCPEVNC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ  180
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EETARTPTIS IINPLQQHQQ  240
LQPQYFHAQQ QQQHYSLIRP EMPTWLSCPQ PIELSTSSPS MYSTRFEQDQ YSQQQTPSHE  300
TEQHQSKNYQ QQISSPSAAA SSAHMSATAL LQKAALMGAT ISKPSSSSAA TASLMNNRVL  360
QPHHSHMSSS NGNNNPTSTT SVTTTETGFG LGLSSHEEDI ENGSSDNNNN SNSFVPDHGL  420
TSFDDDHNNS TKAAMTSGNF MDHHISAQTQ QQLQDMMNSL SSASGGFDMS SSSFGHHHHQ  480
QGFDSTRRSS NESRASSTTT TTKTKTPKQN DGMTRDFLGL RAFSHADILN MNMNMNIGDG  540
NKNFDHHLQQ QCTSAVSPHH FDHHQQVQNQ NTKSWQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-98	C2H2 family protein