PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026446338.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

SBP

Protein Properties

Length: 1043aa MW: 114866 Da PI: 6.7322

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026446338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.5	3e-41	173	250	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adls+ak yhrrhkvCe+hsk+++ lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q XP_026446338.1 173 VCQVEGCGADLSKAKPYHRRHKVCEIHSKTSQSLVGNVMQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNKRRRKPQR 250 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence
MGTRYAMKEK DWMGSTGKKS LEWDLNDWKW DGDLFVATPL NSVPFNSREF LSSRGGEVVP 60 VTTNGGGGGG GSNSSSSCSE EINLRSGDDN KSKKELEKKR RGVVIIDEDD DTELMNDVAE 120 NLTLNLGEHV YPIAQGGDVG GNGKKMKLAE NSAATNTAVT CTTSTTTTTS RAVCQVEGCG 180 ADLSKAKPYH RRHKVCEIHS KTSQSLVGNV MQRFCQQCSR FHLLEEFDEG KRSCRRRLAG 240 HNKRRRKPQR EATFNGSSMN DEEARSCLFV TLLKILSNIH SDTSVQPKDE VMLSHVLRNL 300 GSLANGSGVG NTSGIKQGSQ DLLNEGTFTG APSKIVDRLF SLGSEPSGCL GSSSKIHGAQ 360 EEHVRPANLS VSVAALGISQ VTTSANNLKT AENDIPPEAE VRNLTAGRIK LNNFDLNCTY 420 VDSQDCVEGL KRSETPLNLL SSSLDCPSWV NQHSHHSSPP QTSANSDSAS DQSPSSSSGD 480 AQTRTDRIVF KLFGKDPNDF PLVLRSQVLD WLSNSPAEIE SYIRPGCIML TIYLRLADSM 540 WEELCCGLSS SLSRLLDVSS DPFWRKGWVY VRIQHRTAFI FQGQVVLDML LPFKEHNGCV 600 ISSIKPLALS VSGSARFIVK GFNLVQPTTR LRCALGGKYL VQEDVNDLVE GTGTFSEDEE 660 LQSLSFTCSV PDVTGRGFIE VDDDGLNSSS FPFIVAEQDV CSEIRMLEGA LEESESDDDR 720 RRSGRMGSKD QALSFVHEMG WLLHRCRLRS KVGNMDPNTD MFSFTRFRGL MEFAMDHDWC 780 AVVKKLLDIL FEGSVDAGDH ASIELALSDM GLLHRAVRRN CRLMVERLLR YVPDTASEKI 840 SLGQTQLANR RFLFRPDAIG PGGLTPLHIA ASRIGSESML AVLTDDPGLV GAVAWKSVRD 900 KTGLTPEGYA RMRGHYSYIH LVQKKINNKS ETGHIILNIP PPNASENSNG NQKQKSEVSD 960 SSEVSGFQFE KTELSSSPQS CRFCLQKVTY RKRNNFLGYR PTMLSMVSIA AVCVCLGLLF 1020 KSSPEVLYIL VPFRWEHLDF GPM

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence

MGTRYAMKEK DWMGSTGKKS LEWDLNDWKW DGDLFVATPL NSVPFNSREF LSSRGGEVVP  60
VTTNGGGGGG GSNSSSSCSE EINLRSGDDN KSKKELEKKR RGVVIIDEDD DTELMNDVAE  120
NLTLNLGEHV YPIAQGGDVG GNGKKMKLAE NSAATNTAVT CTTSTTTTTS RAVCQVEGCG  180
ADLSKAKPYH RRHKVCEIHS KTSQSLVGNV MQRFCQQCSR FHLLEEFDEG KRSCRRRLAG  240
HNKRRRKPQR EATFNGSSMN DEEARSCLFV TLLKILSNIH SDTSVQPKDE VMLSHVLRNL  300
GSLANGSGVG NTSGIKQGSQ DLLNEGTFTG APSKIVDRLF SLGSEPSGCL GSSSKIHGAQ  360
EEHVRPANLS VSVAALGISQ VTTSANNLKT AENDIPPEAE VRNLTAGRIK LNNFDLNCTY  420
VDSQDCVEGL KRSETPLNLL SSSLDCPSWV NQHSHHSSPP QTSANSDSAS DQSPSSSSGD  480
AQTRTDRIVF KLFGKDPNDF PLVLRSQVLD WLSNSPAEIE SYIRPGCIML TIYLRLADSM  540
WEELCCGLSS SLSRLLDVSS DPFWRKGWVY VRIQHRTAFI FQGQVVLDML LPFKEHNGCV  600
ISSIKPLALS VSGSARFIVK GFNLVQPTTR LRCALGGKYL VQEDVNDLVE GTGTFSEDEE  660
LQSLSFTCSV PDVTGRGFIE VDDDGLNSSS FPFIVAEQDV CSEIRMLEGA LEESESDDDR  720
RRSGRMGSKD QALSFVHEMG WLLHRCRLRS KVGNMDPNTD MFSFTRFRGL MEFAMDHDWC  780
AVVKKLLDIL FEGSVDAGDH ASIELALSDM GLLHRAVRRN CRLMVERLLR YVPDTASEKI  840
SLGQTQLANR RFLFRPDAIG PGGLTPLHIA ASRIGSESML AVLTDDPGLV GAVAWKSVRD  900
KTGLTPEGYA RMRGHYSYIH LVQKKINNKS ETGHIILNIP PPNASENSNG NQKQKSEVSD  960
SSEVSGFQFE KTELSSSPQS CRFCLQKVTY RKRNNFLGYR PTMLSMVSIA AVCVCLGLLF  1020
KSSPEVLYIL VPFRWEHLDF GPM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	248	KRSCRRRLAGHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein