PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026437475.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

FAR1

Protein Properties

Length: 660aa MW: 75196.8 Da PI: 7.0113

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026437475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.9	2.7e-07	91	175	20	90
FAR1 20 kkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++ g+ t+ t+ C + g ++++kk t+++r+++ ++++gC +lk + d+kw+v+ eHnH+l XP_026437475.1 91 SEKPVPGRKTRITLGCERGGVFRHHTKKdqallefpgrtlapTVRARKHTGTKKCGCPFTLKGVWQPDDKWKVKVECGEHNHALE 175 444456778999******8777766679****************************99999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MEEVPMEVET GGDIELFDPR KEYCATSLQN WGEEEDVLVN PEHEKRATEV LKIDMADQFV 60 TDQVFNTRDE MIAWCQDVGR QNHMIVVTAK SEKPVPGRKT RITLGCERGG VFRHHTKKDQ 120 ALLEFPGRTL APTVRARKHT GTKKCGCPFT LKGVWQPDDK WKVKVECGEH NHALESTVVG 180 HSFAGRLRDD EKQLLKDMIR SGIKPKEVLT TLKKRSKGTN KSTMRTIYNA RAHLRMTEME 240 GRSEMQQVMK LLEEYHYVEW HIKDEETDEV QDVIWSHPDS IQLAKSFPSV LMINSTYRTS 300 RYHMPLSEII GVTSTGKTFT VAFLFMKAEI EERYTWALNQ LKTIYEPNAL PSVFVTSGVT 360 ALVGAIKTVF AKADHILCTF QISRTIMVSC KHEFHNNEYS DSFLKDWENL MQSETPVAFD 420 EGFASFESKW INYPTCVQYL RDNWLGLKEH FVSAWTNKVK HYGYTTTKTI AGAHEKTSRM 480 LGSSQGTFVS CWTEIHSSIT NEITTVKESL VDSLISVKPS HNLPILKDLK NNVSHLALEM 540 LVAERSRGQS IDISGSSCEC SIRFTHGLPC AHEIKQFEHE GRSIALSDID PHWRKLVAVP 600 APIMPRNPDN LPEFDLFKQK WEISSETERL TMLKKLKEII TPSTTGLVFH SPSANDPVAT

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MEEVPMEVET GGDIELFDPR KEYCATSLQN WGEEEDVLVN PEHEKRATEV LKIDMADQFV  60
TDQVFNTRDE MIAWCQDVGR QNHMIVVTAK SEKPVPGRKT RITLGCERGG VFRHHTKKDQ  120
ALLEFPGRTL APTVRARKHT GTKKCGCPFT LKGVWQPDDK WKVKVECGEH NHALESTVVG  180
HSFAGRLRDD EKQLLKDMIR SGIKPKEVLT TLKKRSKGTN KSTMRTIYNA RAHLRMTEME  240
GRSEMQQVMK LLEEYHYVEW HIKDEETDEV QDVIWSHPDS IQLAKSFPSV LMINSTYRTS  300
RYHMPLSEII GVTSTGKTFT VAFLFMKAEI EERYTWALNQ LKTIYEPNAL PSVFVTSGVT  360
ALVGAIKTVF AKADHILCTF QISRTIMVSC KHEFHNNEYS DSFLKDWENL MQSETPVAFD  420
EGFASFESKW INYPTCVQYL RDNWLGLKEH FVSAWTNKVK HYGYTTTKTI AGAHEKTSRM  480
LGSSQGTFVS CWTEIHSSIT NEITTVKESL VDSLISVKPS HNLPILKDLK NNVSHLALEM  540
LVAERSRGQS IDISGSSCEC SIRFTHGLPC AHEIKQFEHE GRSIALSDID PHWRKLVAVP  600
APIMPRNPDN LPEFDLFKQK WEISSETERL TMLKKLKEII TPSTTGLVFH SPSANDPVAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-17	FAR1 family protein