PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026433220.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 25970.5 Da PI: 9.803

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026433220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87	1e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgkly+++s XP_026433220.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYDFAS 59 8***********************************************86 PP
2	K-box	85.9	8.4e-29	86	175	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+a L+++++nLq+++R+l+Ge+L+ Ls+k+Lq+Le+qLe sl+ +R kK++ll+++ie+l +k + +++e ++L kk+ XP_026433220.1 86 NPTSEVKFWQREAAGLRQQLQNLQENHRQLMGEELSGLSVKDLQNLENQLEMSLRGVRVKKDQLLTDKIEDLSRKGNLIHQEYMELYKKV 175 678899********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYDFAST 60 RSDGTFMKTV IERHNKSKEE HHQVMNPTSE VKFWQREAAG LRQQLQNLQE NHRQLMGEEL 120 SGLSVKDLQN LENQLEMSLR GVRVKKDQLL TDKIEDLSRK GNLIHQEYME LYKKVYGNTS 180 GANRTSLLPN AFSIEDDLNV PVHLQLSQPQ QDDHASSEKA TKLGLQLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-96	MIKC_MADS family protein