PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026431442.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 28206.9 Da PI: 7.7358

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026431442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.6	1.6e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev ++ifsstgklye+ss XP_026431442.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELSILCDAEVGLMIFSSTGKLYEFSS 59 8***********************************************96 PP
2	K-box	81.3	2.2e-27	82	171	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++a+ +++e+a L+ +++nLq+++R+l+G++L+sLs+keLq Le+qLe sl+ +R +K++ l++qi el +k + l++en++L +k XP_026431442.1 82 NATSEAKFWKREAATLRHQLQNLQENHRQLMGQELSSLSVKELQTLENQLEMSLRGVRMQKDQKLTDQIYELNRKGNLLHQENMELFRKE 171 678899********************************************************************************8875 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGKIVIRR IDNTTSRQVT FSKRRNGLLK KAKELSILCD AEVGLMIFSS TGKLYEFSST 60 NMKSIIERYN TSKEDQHHPL MNATSEAKFW KREAATLRHQ LQNLQENHRQ LMGQELSSLS 120 VKELQTLENQ LEMSLRGVRM QKDQKLTDQI YELNRKGNLL HQENMELFRK ENHIRQENMD 180 LLKKINDAGD AHETSRVSHS PNVFNLDEEE DDDDCIILQL SQPQQQNYAT PQNPTTLRLQ 240 LQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	4e-91	MIKC_MADS family protein