PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026427583.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 32275.3 Da    PI: 8.7685
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026427583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.8e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien++nrqvtfskRr g+lKKA+EL vLCda+  +iifss+gk++eyss
  XP_026427583.1 10 RIENSTNRQVTFSKRRGGLLKKAHELAVLCDAQLGLIIFSSSGKMFEYSS 59
                    8***********************************************96 PP
2K-box782.4e-2671168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+sg++ +e ++++  +e++++k e+++Lq + R+  GedL++L + +L+qLe qLe+s++k+R++Kn+ll +q+++l++ke+ l++++++L 
  XP_026427583.1  71 YQKTSGVRIQEYDNQQIFTEITRMKHETDKLQAKMRRHTGEDLNDLRYDDLEQLELQLENSVNKVRARKNQLLQQQLDNLRRKEQILEQQHNYLC 165
                     8999*****************************************************************************************98 PP

           K-box  96 kkl 98 
                     + l
  XP_026427583.1 166 RYL 168
                     765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGRGKIEIRR IENSTNRQVT FSKRRGGLLK KAHELAVLCD AQLGLIIFSS SGKMFEYSSP  60
PSNMRQIIER YQKTSGVRIQ EYDNQQIFTE ITRMKHETDK LQAKMRRHTG EDLNDLRYDD  120
LEQLELQLEN SVNKVRARKN QLLQQQLDNL RRKEQILEQQ HNYLCRYLEQ QASMEEHHRP  180
QSLLLEPKLS LSGEEQSAVA TATGGATTFD IHFAMQPYHP AYQVDQGCSS SSRHNSRSSL  240
EFSSLLHHQL HPYRLQPTQP NLQEVVTADQ LQHRGLQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.24e-41MIKC_MADS family protein