PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026426232.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 623aa MW: 68968.7 Da PI: 8.4365

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026426232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	80	100	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_026426232.1 80 CEICNKGFQRDQNLQLHRRGH 100 *******************88 PP
2	zf-C2H2	12.4	0.00048	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_026426232.1 154 WKCEKCSKKYAVQSDWKAHSKTC 176 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MQMMSGDGFS MNPSSTTRGF AQELPNNNSN LNLTSSTTTG ANQGSGAAKR KRNLPGTPDP 60 DAEVIALSPK SLMATNRFLC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS NKEVKKKVYI 120 CPEKSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE 180 YKCDCGTLFS RKDSFITHRA FCDALAEESA RITSVPTNLS FRSDSMNDTL GNSQRMNHHL 240 PLGFENRGGG GGQDYSRLNP SQFNSIFRPD FSGGETDMDR QNKPRLPLWL DQASLQHHHH 300 QLNSIDHGNS NNAAAFLSTN SAGLPELVQM ASTNFFGSSP IVDYGGGMNN QSQWGEKSSL 360 TTSSPSGLKE EGGNNKEQMA VESSLASLYS NQQQQQNSSM NMSATALLQK AATLGATRSN 420 PNFNAGYGGV MSSNTSLSPS SDNTNSFNNN THSSSSQSRN EFHQLFMRQQ QQQQQQHQHQ 480 QQQKQHHPQQ QQQSHDDGQS LNSLMMNSIS SMGPTTSTVH AAIINNNNDS HHQGVMGLSN 540 EASNNLDRLI SAAEAVTNGS KQMNKQQFHQ QQVDDEHSLT RDFLGVGAGE EEDDNGRHHQ 600 FLQHELAKFA SIGSGLDFNH YNR

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MQMMSGDGFS MNPSSTTRGF AQELPNNNSN LNLTSSTTTG ANQGSGAAKR KRNLPGTPDP  60
DAEVIALSPK SLMATNRFLC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS NKEVKKKVYI  120
CPEKSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE  180
YKCDCGTLFS RKDSFITHRA FCDALAEESA RITSVPTNLS FRSDSMNDTL GNSQRMNHHL  240
PLGFENRGGG GGQDYSRLNP SQFNSIFRPD FSGGETDMDR QNKPRLPLWL DQASLQHHHH  300
QLNSIDHGNS NNAAAFLSTN SAGLPELVQM ASTNFFGSSP IVDYGGGMNN QSQWGEKSSL  360
TTSSPSGLKE EGGNNKEQMA VESSLASLYS NQQQQQNSSM NMSATALLQK AATLGATRSN  420
PNFNAGYGGV MSSNTSLSPS SDNTNSFNNN THSSSSQSRN EFHQLFMRQQ QQQQQQHQHQ  480
QQQKQHHPQQ QQQSHDDGQS LNSLMMNSIS SMGPTTSTVH AAIINNNNDS HHQGVMGLSN  540
EASNNLDRLI SAAEAVTNGS KQMNKQQFHQ QQVDDEHSLT RDFLGVGAGE EEDDNGRHHQ  600
FLQHELAKFA SIGSGLDFNH YNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-102	C2H2 family protein