PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026425261.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 521aa MW: 57600.8 Da PI: 8.5513

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026425261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_026425261.1 92 FVCEVCNKGFQRDQNLQLHRRGH 114 89*******************88 PP
2	zf-C2H2	11.9	0.00067	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ XP_026425261.1 169 WKCEKCSKKYAVQSDWKAHSKNC 191 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MFPETFSNST SLSEEVSAGS SHGNNNTTTR LQDLSPILFS SSSTDHHHEQ HQQQSEETTT 60 KTRKKRNLPG NPDPNAEVVA LSPTTLMATN RFVCEVCNKG FQRDQNLQLH RRGHNLPWKL 120 KQKSNTDVVR KKVYVCPEVS CIHHHPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV 180 QSDWKAHSKN CGTKEYRCDC GTLFARKDSF ITHRAFCDAL AEESARLVSS SASDLNNFST 240 STQMTPLLHH YNNEPLSLQT HSSLHFQHQQ SNNTQSALSY QFTGQHHQNF SNPTPISIIT 300 SSSSWADHPS PTSDHPVKLE NQHNNQILIP TSISSFYQES PPLPSPNTTT AAAAAISDQQ 360 KSLFTPNFLR HFSDNMVSNS NTSTSYMSAT ALLQKAANVG AGPIGGPTMQ TQSVGHMSGS 420 SMSQMGKTCL SSSPSEEFLG FATSNSANQS TWQKKDFRLT RDFLGLAPAD HNSVTNVLDV 480 NEMNQMNGNV NVRKSDLLSY TGGVDFGAYE RGFAAGAWRN C

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MFPETFSNST SLSEEVSAGS SHGNNNTTTR LQDLSPILFS SSSTDHHHEQ HQQQSEETTT  60
KTRKKRNLPG NPDPNAEVVA LSPTTLMATN RFVCEVCNKG FQRDQNLQLH RRGHNLPWKL  120
KQKSNTDVVR KKVYVCPEVS CIHHHPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV  180
QSDWKAHSKN CGTKEYRCDC GTLFARKDSF ITHRAFCDAL AEESARLVSS SASDLNNFST  240
STQMTPLLHH YNNEPLSLQT HSSLHFQHQQ SNNTQSALSY QFTGQHHQNF SNPTPISIIT  300
SSSSWADHPS PTSDHPVKLE NQHNNQILIP TSISSFYQES PPLPSPNTTT AAAAAISDQQ  360
KSLFTPNFLR HFSDNMVSNS NTSTSYMSAT ALLQKAANVG AGPIGGPTMQ TQSVGHMSGS  420
SMSQMGKTCL SSSPSEEFLG FATSNSANQS TWQKKDFRLT RDFLGLAPAD HNSVTNVLDV  480
NEMNQMNGNV NVRKSDLLSY TGGVDFGAYE RGFAAGAWRN C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	132	KLKQKSNTDVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	7e-99	C2H2 family protein