PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026423706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 20908.6 Da PI: 4.6627 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 43.1 | 1.3e-13 | 3 | 88 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGa.snvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aC +r+C+++C la+++ + + ++ v+ FG +n ++l++a ++re+a+++l+ eA +r +dPv G++gv ++ +l+ XP_026423706.1 3 SCLACTRIGRDCPENCLLAKHINSV--EVMQTVEGHFGSlANFIRLVEA-GASNREKAAQTLLHEATCRKKDPVLGVLGVARRAGAHLK 88 6********************6555..5778888889953788888877.8899*************************9987666555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MTSCLACTRI GRDCPENCLL AKHINSVEVM QTVEGHFGSL ANFIRLVEAG ASNREKAAQT 60 LLHEATCRKK DPVLGVLGVA RRAGAHLKTV YLASTQPATS PLAVERPVNQ GSSSNIDTVA 120 GQFPSTDDLP GSSVTAEMDE LIAAAAAEVP KNAGLEAFIS AAARDPTVPI EELSRFIDIT 180 EKEVWDIINE ENPNQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 6e-09 | LBD family protein |