PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026423228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | LBD | ||||||||
Protein Properties | Length: 301aa MW: 33802.5 Da PI: 4.6272 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 3.9e-40 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++qpk f+n+h+lFG+sn++k+lk l ++ +++a++s++ye+++rar Pv+G+ gvi +lq ql+q++ el+ XP_026423228.1 10 ACAACKYQRRKCAPDCALAPYFPHDQPKMFQNAHRLFGVSNIQKILKPLTPNLKKEATRSIIYESNMRARFPVSGCQGVIIQLQYQLQQAELELH 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_026423228.1 105 YVRAQL 110 *99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MTVKGGTNHA CAACKYQRRK CAPDCALAPY FPHDQPKMFQ NAHRLFGVSN IQKILKPLTP 60 NLKKEATRSI IYESNMRARF PVSGCQGVII QLQYQLQQAE LELHYVRAQL EMYRQQNQIQ 120 TSPELLQLGN LNMAAAASPA PDYNTLSLFQ QQSYDDNNVS VVNGDVAGIM PMQSFSNENS 180 QGYGNDVTPV DYVKNEIVNP LWMQHDFIAN DHHNGNNNNN STKVQSHEFF VEQPVLFQQE 240 PDVLESQDYD EMPAFFDAID DKEGYESSPE SSPGDATQSI EHVSENELKN AAACFSLTSV 300 N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 8e-38 | LBD family protein |