PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026423227.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LBD

Protein Properties

Length: 302aa MW: 33889.6 Da PI: 4.6272

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026423227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.1	4e-40	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++qpk f+n+h+lFG+sn++k+lk l ++ +++a++s++ye+++rar Pv+G+ gvi +lq ql+q++ el+ XP_026423227.1 10 ACAACKYQRRKCAPDCALAPYFPHDQPKMFQNAHRLFGVSNIQKILKPLTPNLKKEATRSIIYESNMRARFPVSGCQGVIIQLQYQLQQAELELH 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_026423227.1 105 YVRAQL 110 *99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MTVKGGTNHA CAACKYQRRK CAPDCALAPY FPHDQPKMFQ NAHRLFGVSN IQKILKPLTP 60 NLKKEATRSI IYESNMRARF PVSGCQGVII QLQYQLQQAE LELHYVRAQL EMYRQQNQIQ 120 TSPELLQLGN LNMAAAASPA PDYNTLSLFQ QQSYDDNNVS VVNGDVAGIM PMQSFSNENS 180 QGYGNDVTPV DYVKNEIVNP LWMQHDFIAN DHHNGNNNNN STKVQSHEFF VEQPVLFQQE 240 PDVLESQDYD EMPAFFDAID DKEGYESSSP ESSPGDATQS IEHVSENELK NAAACFSLTS 300 VN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	8e-38	LBD family protein