PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026423020.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

NF-YC

Protein Properties

Length: 257aa MW: 28570.2 Da PI: 5.8624

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026423020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.8e-56	83	186	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_026423020.1 83 QLQTFWANQfqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 177 89****99999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_026423020.1 178 VDIVPREDL 186 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MDQQGHGQPP VMGVPQMPYG ANPYQANQMV GSTQSGSIPT SGGSTQSPGQ TTGFAASPSQ 60 LAQHQQLAYQ HIHIQQQQQL QQQLQTFWAN QFQEIEQTTD FKNHSLPLAR IKKIMKADED 120 VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI 180 VPREDLKDEV LGSIPRGGTM PVGGPADALP YYYMNAPQVG TPGMIMGKPV DQAMYAQPAH 240 PYMWPQPPQQ QQPPSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	6e-82	NF-YC family protein