PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026421411.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LBD

Protein Properties

Length: 273aa MW: 30572.8 Da PI: 5.9457

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026421411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1.1e-37	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp +r +a+ ++ yeA+ar++dPvyG v++i++lqqq+ +l+a++ XP_026421411.1 7 PCGACKFLRRKCARGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLTHLPLGDRCEAAVTISYEAQARIQDPVYGYVSHIFALQQQVVSLQAQI 101 7***********************89***************************************************************** PP DUF260 95 allkee 100 a+l+++ XP_026421411.1 102 ATLRAQ 107 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MTGFGSPCGA CKFLRRKCAR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLTHLPLGD 60 RCEAAVTISY EAQARIQDPV YGYVSHIFAL QQQVVSLQAQ IATLRAQQAA EGFVNGGNIN 120 TSTNDHIHQQ DNHNKLFYGD FPTTYPQNIQ ALNMQLNESK VLSEHLYQNN SSMNDSNNTI 180 YYENGVVNME DSPSNQMSPG YHAQSSIPPE ETVHQFLTST SFDDQYSSDE HHQHAAMASQ 240 YLDDIQMTAR KWTIQDTDQV DLQSMAFAYF QHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-54	LBD family protein