PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026416250.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family LBD
Protein Properties Length: 201aa    MW: 22207.3 Da    PI: 6.2332
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026416250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.76.3e-41291281100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C ++C+lapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA++r+r+PvyG++g+i +lq+q+  l+a la
  XP_026416250.1  29 PCAACKILRRRCGEKCILAPYFPPTEPLKFTTAHRVFGASNITKMLQELPESQRVDAVSSMVYEANWRIRNPVYGCAGTIYQLQKQVGDLQALLA 123
                     7*******************************************************************************************999 PP

          DUF260  96 llkee 100
                     + ++e
  XP_026416250.1 124 KCQAE 128
                     98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MGSSTDTSMA TNIHNQSPAP SLCQVVVTPC AACKILRRRC GEKCILAPYF PPTEPLKFTT  60
AHRVFGASNI TKMLQELPES QRVDAVSSMV YEANWRIRNP VYGCAGTIYQ LQKQVGDLQA  120
LLAKCQAEII SMQCQQAHFV GPLCMEMKQS SLSSLQQDID DFMSNKISTQ SSSPDNNFDG  180
LGFGEANTCS EWEPSLWTRL N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-63LBD family protein