PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026415879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24995.2 Da PI: 6.4014 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.4 | 3.5e-36 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+apyf+ ++ + +fa+vhk+FGa+nv+k l++lp ++r++a+ ++ yeA ar+rdP yG+v+ i++lqqq++ l++e+ XP_026415879.1 7 SCGACKFLRRKCNNGCVFAPYFCFDEsATHFAAVHKVFGAANVSKHLSQLPVQDRSEAALTISYEAIARMRDPTYGCVAQIFALQQQVAILQKEI 101 6*********************997768******************************************************************9 PP DUF260 95 allkee 100 + l+++ XP_026415879.1 102 QNLETQ 107 988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MGKHGASCGA CKFLRRKCNN GCVFAPYFCF DESATHFAAV HKVFGAANVS KHLSQLPVQD 60 RSEAALTISY EAIARMRDPT YGCVAQIFAL QQQVAILQKE IQNLETQVAA TRSTSAPVNH 120 QSVHTFNNIN SSPFHFSSSQ LHDWNLHNSD PSNLMSIING NVVTLQMNQI FGAEYTNVPN 180 SCQSGQLEQE IFFNDPCWLD IPTISLQSSS TGQVINCPSL LDDILLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 9e-53 | LBD family protein |