PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026414806.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

NF-YC

Protein Properties

Length: 282aa MW: 31099.9 Da PI: 4.4029

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026414806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	34.1	6e-11	1	68	30	97
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++++v++ ++fdfl +i XP_026414806.1 1 MQADEDVGKIALAVPLLVSKALELFLQDLCDRTYDVTLRRGAKTMSSLHLKQCVQSFNVFDFLKEILS 68 899************************************************************99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MQADEDVGKI ALAVPLLVSK ALELFLQDLC DRTYDVTLRR GAKTMSSLHL KQCVQSFNVF 60 DFLKEILSKV PDFGGSDAGG EDRANKRSRK TVVDEDNDSE EEGKRNRISH ETGHNSSSGR 120 GRGRSRGRGR GRGRPLVDRE SIRLEKCEGD PDMSPQHDNQ NPETISPDNG IEPRESADNM 180 TTFGNTSDTE IRNFDLNVVL DDSGTNQLVR SDSGTTAAPS ATAASTSGPA TSAEPPPEIK 240 QHEEYPGWSI SDMDKMSIDP LQLAQLNSKR LDEEEDYDEE EE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	130	RGRGRSRGRGR
2	122	132	RGRGRSRGRGR
3	124	134	RGRGRSRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	9e-47	NF-YC family protein