PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026414792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | NF-YC | ||||||||
Protein Properties | Length: 299aa MW: 33170.4 Da PI: 4.6744 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 54.7 | 2.3e-17 | 6 | 85 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ++++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++++v++ ++fdfl +i XP_026414792.1 6 DTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYDVTLRRGAKTMSSLHLKQCVQSFNVFDFLKEILS 85 5789***********************************************************************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MRKKLDTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YDVTLRRGAK 60 TMSSLHLKQC VQSFNVFDFL KEILSKVPDF GGSDAGGEDR ANKRSRKTVV DEDNDSEEEG 120 KRNRISHETG HNSSSGRGRG RSRGRGRGRG RPLVDRESIR LEKCEGDPDM SPQHDNQNPE 180 TISPDNGIEP RESADNMTTF GNTSDTEIRN FDLNVVLDDS GTNQLVRSDS GTTAAPSATA 240 ASTSGPATSA EPPPEIKQHE EYPGWSISDM DKMSIDPLQL AQLNSKRLDE EEDYDEEEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 147 | RGRGRSRGRGR |
2 | 139 | 149 | RGRGRSRGRGR |
3 | 141 | 151 | RGRGRSRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-59 | NF-YC family protein |