PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026413406.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 527aa MW: 58315.6 Da PI: 8.895

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026413406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_026413406.1 92 FVCEVCNKGFQRDQNLQLHRRGH 114 89*******************88 PP
2	zf-C2H2	11.9	0.00068	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ XP_026413406.1 169 WKCEKCSKKYAVQSDWKAHSKNC 191 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MFPETFSNST SLSEEVSAGS SHGNNNTTTR LQDLSPILFS SSSNDHHHEQ HQQQSEETTT 60 KTRKKRNLPG NPDPNAEVVA LSPTTLMATN RFVCEVCNKG FQRDQNLQLH RRGHNLPWKL 120 KQKSNTDVVR KKVYVCPDVS CIHHHPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV 180 QSDWKAHSKN CGTKEYRCDC GTLFARKDSF ITHRAFCDAL AEESARLVSS SASDLNNLST 240 STQITPLLHH YSNEPPLALQ THSSLHFQHQ QSNNTQSSLS YQFTGQHHQN FPNPTPISII 300 TSSSSWADHP SPTSDHPVKL ENQHNNNQIL LPTSISSFYQ ESPPLPSPNT TTAAAISDQR 360 KSLFTPNFLR HFSNNMVSNS NTSTSYMSAT ALLQKAANVG AGPIGGPTMQ TQSVGHMSGS 420 SMSQMSIMSQ MGKTCLSSSP SEEFLGFASS NSANQSTWQK KDFRLTRDFL GLAPADHNSV 480 TNVLDVNERN QMNGNVNVRK SDLLSYTGGV DFGAYERGFA AGAWRNC

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MFPETFSNST SLSEEVSAGS SHGNNNTTTR LQDLSPILFS SSSNDHHHEQ HQQQSEETTT  60
KTRKKRNLPG NPDPNAEVVA LSPTTLMATN RFVCEVCNKG FQRDQNLQLH RRGHNLPWKL  120
KQKSNTDVVR KKVYVCPDVS CIHHHPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV  180
QSDWKAHSKN CGTKEYRCDC GTLFARKDSF ITHRAFCDAL AEESARLVSS SASDLNNLST  240
STQITPLLHH YSNEPPLALQ THSSLHFQHQ QSNNTQSSLS YQFTGQHHQN FPNPTPISII  300
TSSSSWADHP SPTSDHPVKL ENQHNNNQIL LPTSISSFYQ ESPPLPSPNT TTAAAISDQR  360
KSLFTPNFLR HFSNNMVSNS NTSTSYMSAT ALLQKAANVG AGPIGGPTMQ TQSVGHMSGS  420
SMSQMSIMSQ MGKTCLSSSP SEEFLGFASS NSANQSTWQK KDFRLTRDFL GLAPADHNSV  480
TNVLDVNERN QMNGNVNVRK SDLLSYTGGV DFGAYERGFA AGAWRNC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	132	KLKQKSNTDVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	5e-98	C2H2 family protein