PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026412904.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

FAR1

Protein Properties

Length: 672aa MW: 76812.9 Da PI: 8.3312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026412904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.3	2.2e-07	45	113	23	89
FAR1 23 krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 k+ g+ ++ C ++g +++ ++ ++ ++r+r+++++gC kl+ + +kw++ + +HnHe+ XP_026412904.1 45 KQGGKGSVVELGCERSGVYSRRMSNisKSGQKRKRESKKCGCPLKLRCTCIGGNKWKLRVCCGKHNHEV 113 55667788899****99999998777889999*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MEGIDLTQCF QIDKEFDSRE AIIKWCQEVA GKNNTVLATI KSVKKQGGKG SVVELGCERS 60 GVYSRRMSNI SKSGQKRKRE SKKCGCPLKL RCTCIGGNKW KLRVCCGKHN HEVERTQAVD 120 VLSMEDAVII EDNNAVKENL STEGGSSNGS CREASRSLNA IRDSESRPSD DFNVKKGSVS 180 QPEKDTSVME EEVLVFEEGI GLTHCCQTDK DLDGEKCSDS HLQKDTNVME EDVSIFKEGI 240 DLTQCFQTDK EFDTREAVIH WCQEVARSNN TGLVISKTLK KPGGKGSLVE LGCVRSGAYR 300 SHRKNGDKVL RKRKVLSKKC RCPFKLRSTC VEGNKWKLRV CCGRHNHEVE RIPPGHSYFR 360 RWKEDEDQLL CELTASGLRP RQVLHALKER SKENFLDIKT IYNRRTRLKL HGTGRSSVMQ 420 QVMKLSAQYH YMEWHRKDKE TCELKDIIWA HPESTLLAQC FPFMLMIDCT YKTSKFKIPF 480 FHVAGVSSVG TSFTVAYAFI EEETEEHFSW ALMQLKSLYS PNNLPSVVLV NGKLPLINAI 540 SIVFPGADKL ICPNHIAKTI EINCKNAFEN SEMWNNFCQD WENVWKAETK EDYVDMYTEF 600 VTTWVARNVT CITYIRDTWL VHKESFIIAW AQKIKHFGYT VINRVENERD QLKKCMESSG 660 HSFFLVGKHC TT

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MEGIDLTQCF QIDKEFDSRE AIIKWCQEVA GKNNTVLATI KSVKKQGGKG SVVELGCERS  60
GVYSRRMSNI SKSGQKRKRE SKKCGCPLKL RCTCIGGNKW KLRVCCGKHN HEVERTQAVD  120
VLSMEDAVII EDNNAVKENL STEGGSSNGS CREASRSLNA IRDSESRPSD DFNVKKGSVS  180
QPEKDTSVME EEVLVFEEGI GLTHCCQTDK DLDGEKCSDS HLQKDTNVME EDVSIFKEGI  240
DLTQCFQTDK EFDTREAVIH WCQEVARSNN TGLVISKTLK KPGGKGSLVE LGCVRSGAYR  300
SHRKNGDKVL RKRKVLSKKC RCPFKLRSTC VEGNKWKLRV CCGRHNHEVE RIPPGHSYFR  360
RWKEDEDQLL CELTASGLRP RQVLHALKER SKENFLDIKT IYNRRTRLKL HGTGRSSVMQ  420
QVMKLSAQYH YMEWHRKDKE TCELKDIIWA HPESTLLAQC FPFMLMIDCT YKTSKFKIPF  480
FHVAGVSSVG TSFTVAYAFI EEETEEHFSW ALMQLKSLYS PNNLPSVVLV NGKLPLINAI  540
SIVFPGADKL ICPNHIAKTI EINCKNAFEN SEMWNNFCQD WENVWKAETK EDYVDMYTEF  600
VTTWVARNVT CITYIRDTWL VHKESFIIAW AQKIKHFGYT VINRVENERD QLKKCMESSG  660
HSFFLVGKHC TT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	313	DKVLRKR
2	308	314	KVLRKRK
3	311	337	RKRKVLSKKCRCPFKLRSTCVEGNKWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1 family protein