PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026409523.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 369aa MW: 41755.8 Da PI: 6.331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026409523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00097	6	26	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C k+Fs+ L H+++H XP_026409523.1 6 CKICFKRFSNGRALGGHMKSH 26 *******************99 PP
2	zf-C2H2	12.1	0.00058	243	265	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_026409523.1 243 YQCESCKKVFRSYQALGGHRANH 265 9***********99999998887 PP
3	zf-C2H2	15.1	6.5e-05	290	311	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kCp C ksF+++ L H r H XP_026409523.1 290 KCPVCFKSFKSRQALGGHKRIH 311 8******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MEKRNCKICF KRFSNGRALG GHMKSHMAIL QTPPKVEQTK FNFQQEQIRN EAESSEEEQG 60 DEEEMKNGLY NGLREHPEKS FRLVDPIFSS STATMEVGNS SSVIIDRESE TDESFKNNTP 120 SLTRRRSKRN RRIPITQKDQ YLTYNEEIHC NIKKMKKLKK AIMKAEAFEP VESEPVSSVS 180 DNTIEEDVAF SLMMLSRDTW IKESDEVSEK SIDIEDDYDS EEEIIKLTSY TSRTAATPTR 240 KKYQCESCKK VFRSYQALGG HRANHSKING CILPSSTIQA DQSNADDYLK CPVCFKSFKS 300 RQALGGHKRI HFSADLTAAA AAATNSNTTT STVPISAASK SIKFRDNLID LNLPAPIEED 360 DNSEFIDLI

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MEKRNCKICF KRFSNGRALG GHMKSHMAIL QTPPKVEQTK FNFQQEQIRN EAESSEEEQG  60
DEEEMKNGLY NGLREHPEKS FRLVDPIFSS STATMEVGNS SSVIIDRESE TDESFKNNTP  120
SLTRRRSKRN RRIPITQKDQ YLTYNEEIHC NIKKMKKLKK AIMKAEAFEP VESEPVSSVS  180
DNTIEEDVAF SLMMLSRDTW IKESDEVSEK SIDIEDDYDS EEEIIKLTSY TSRTAATPTR  240
KKYQCESCKK VFRSYQALGG HRANHSKING CILPSSTIQA DQSNADDYLK CPVCFKSFKS  300
RQALGGHKRI HFSADLTAAA AAATNSNTTT STVPISAASK SIKFRDNLID LNLPAPIEED  360
DNSEFIDLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	160	RRSKRNRRIPITQKDQYLTYNEEIHCNIKKMKKLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-29	C2H2 family protein