PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026409123.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 687aa MW: 76889.6 Da PI: 8.625

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026409123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	69	90	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_026409123.1 69 KCDKCVREFCSPINYRRHIRLH 90 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MMFGQNLVKA DETNVSLDTF IRQAIGKEPV LPYSRAADSP IQWIQFLSSL DPQADLSGWP 60 LYPKVPMQKC DKCVREFCSP INYRRHIRLH RRSLKIEKDS TKIRDLMGAF WDKLSVDEAK 120 DVISFDTVML EGVPGSAVVR ALASFIRKPG FFSLPQSYVK AGAALLDLIQ GRPSRFPISS 180 TELFSILHDA SEKTFLCPGT ATSMQKFMFD GEPGKIGFEM KNLIACTSFL VEQKLIKECL 240 VEKDAEALRC QKLLVEEEEA AQRRQFELLE RKRLKKLRQK EQKAKEQVEV EDVDLKEDSS 300 ISVEVSESTS ISHTPELSIV RSASTDEGCD NADNAEKAEI DMAYETSNSN DPQDFDHQHV 360 QQGNSQQQGD GQQHGNGRQR AVANRRSQRS EPNSFRTGHV VPVSKLGAIQ KRGNYRDLKT 420 TPLANKSQRV WTRKTKIENE RIGSNAGVRD TRDKQDLGGS RDLLIGSIPV TLAECSTSSQ 480 IKVDQCTLDH QPGQRNISSS SIQEKSVKIE LVQSGTNKSK TKHWRPVGRR ERRKREKIES 540 VGESSNLIDD SCIPRNNSDG CSGLEGARSS EATEELHSTG KKLFSSHEVK AFLAQRWKEA 600 ITSDHVKLVL SPETELPECV ENQDVQVTAH IPSESCNRSI LGSAENRLAG TNGPERAKNG 660 TSKHAKFKAK PERGYKLKRI PEQRNSS

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MMFGQNLVKA DETNVSLDTF IRQAIGKEPV LPYSRAADSP IQWIQFLSSL DPQADLSGWP  60
LYPKVPMQKC DKCVREFCSP INYRRHIRLH RRSLKIEKDS TKIRDLMGAF WDKLSVDEAK  120
DVISFDTVML EGVPGSAVVR ALASFIRKPG FFSLPQSYVK AGAALLDLIQ GRPSRFPISS  180
TELFSILHDA SEKTFLCPGT ATSMQKFMFD GEPGKIGFEM KNLIACTSFL VEQKLIKECL  240
VEKDAEALRC QKLLVEEEEA AQRRQFELLE RKRLKKLRQK EQKAKEQVEV EDVDLKEDSS  300
ISVEVSESTS ISHTPELSIV RSASTDEGCD NADNAEKAEI DMAYETSNSN DPQDFDHQHV  360
QQGNSQQQGD GQQHGNGRQR AVANRRSQRS EPNSFRTGHV VPVSKLGAIQ KRGNYRDLKT  420
TPLANKSQRV WTRKTKIENE RIGSNAGVRD TRDKQDLGGS RDLLIGSIPV TLAECSTSSQ  480
IKVDQCTLDH QPGQRNISSS SIQEKSVKIE LVQSGTNKSK TKHWRPVGRR ERRKREKIES  540
VGESSNLIDD SCIPRNNSDG CSGLEGARSS EATEELHSTG KKLFSSHEVK AFLAQRWKEA  600
ITSDHVKLVL SPETELPECV ENQDVQVTAH IPSESCNRSI LGSAENRLAG TNGPERAKNG  660
TSKHAKFKAK PERGYKLKRI PEQRNSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	277	ERKRLKKL
2	529	536	RRERRKRE
3	532	537	RRKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	8e-93	C2H2 family protein