PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026409122.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 700aa MW: 78288.2 Da PI: 8.7236

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026409122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	82	103	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_026409122.1 82 KCDKCVREFCSPINYRRHIRLH 103 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MPAAKLRSSN NLDAMMFGQN LVKADETNVS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF 60 LSSLDPQDLS GWPLYPKVPM QKCDKCVREF CSPINYRRHI RLHRRSLKIE KDSTKIRDLM 120 GAFWDKLSVD EAKDVISFDT VMLEGVPGSA VVRALASFIR KPGFFSLPQS YVKAGAALLD 180 LIQGRPSRFP ISSTELFSIL HDASEKTFLC PGTATSMQKF MFDGEPGKIG FEMKNLIACT 240 SFLVEQKLIK ECLVEKDAEA LRCQKLLVEE EEAAQRRQFE LLERKRLKKL RQKEQKAKEQ 300 VEVEDVDLKE DSSISVEVSE STSISHTPEL SIVRSASTDE GCDNADNAEK AEIDMAYETS 360 NSNDPQDFDH QHVQQGNSQQ QGDGQQHGNG RQRAVANRRS QRSEPNSFRT GHVVPVSKLG 420 AIQKRGNYRD LKTTPLANKS QRVWTRKTKI ENERIGSNAG VRDTRDKQDL GGSRDLLIGS 480 IPVTLAECST SSQIKVDQCT LDHQPGQRNI SSSSIQEKSV KIELVQSGTN KSKTKHWRPV 540 GRRERRKREK IESVGESSNL IDDSCIPRNN SDGCSGLEGA RSSEATEELH STGKKLFSSH 600 EVKAFLAQRW KEAITSDHVK LVLSPETELP ECVENQDVQV TAHIPSESCN RSILGSAENR 660 LAGTNGPERA KNGTSKHAKF KAKPERGYKL KRIPEQRNSS

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MPAAKLRSSN NLDAMMFGQN LVKADETNVS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF  60
LSSLDPQDLS GWPLYPKVPM QKCDKCVREF CSPINYRRHI RLHRRSLKIE KDSTKIRDLM  120
GAFWDKLSVD EAKDVISFDT VMLEGVPGSA VVRALASFIR KPGFFSLPQS YVKAGAALLD  180
LIQGRPSRFP ISSTELFSIL HDASEKTFLC PGTATSMQKF MFDGEPGKIG FEMKNLIACT  240
SFLVEQKLIK ECLVEKDAEA LRCQKLLVEE EEAAQRRQFE LLERKRLKKL RQKEQKAKEQ  300
VEVEDVDLKE DSSISVEVSE STSISHTPEL SIVRSASTDE GCDNADNAEK AEIDMAYETS  360
NSNDPQDFDH QHVQQGNSQQ QGDGQQHGNG RQRAVANRRS QRSEPNSFRT GHVVPVSKLG  420
AIQKRGNYRD LKTTPLANKS QRVWTRKTKI ENERIGSNAG VRDTRDKQDL GGSRDLLIGS  480
IPVTLAECST SSQIKVDQCT LDHQPGQRNI SSSSIQEKSV KIELVQSGTN KSKTKHWRPV  540
GRRERRKREK IESVGESSNL IDDSCIPRNN SDGCSGLEGA RSSEATEELH STGKKLFSSH  600
EVKAFLAQRW KEAITSDHVK LVLSPETELP ECVENQDVQV TAHIPSESCN RSILGSAENR  660
LAGTNGPERA KNGTSKHAKF KAKPERGYKL KRIPEQRNSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	290	ERKRLKKL
2	542	549	RRERRKRE
3	545	550	RRKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	8e-93	C2H2 family protein