PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026409121.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 701aa MW: 78359.3 Da PI: 8.7236

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026409121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	83	104	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_026409121.1 83 KCDKCVREFCSPINYRRHIRLH 104 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MPAAKLRSSN NLDAMMFGQN LVKADETNVS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF 60 LSSLDPQADL SGWPLYPKVP MQKCDKCVRE FCSPINYRRH IRLHRRSLKI EKDSTKIRDL 120 MGAFWDKLSV DEAKDVISFD TVMLEGVPGS AVVRALASFI RKPGFFSLPQ SYVKAGAALL 180 DLIQGRPSRF PISSTELFSI LHDASEKTFL CPGTATSMQK FMFDGEPGKI GFEMKNLIAC 240 TSFLVEQKLI KECLVEKDAE ALRCQKLLVE EEEAAQRRQF ELLERKRLKK LRQKEQKAKE 300 QVEVEDVDLK EDSSISVEVS ESTSISHTPE LSIVRSASTD EGCDNADNAE KAEIDMAYET 360 SNSNDPQDFD HQHVQQGNSQ QQGDGQQHGN GRQRAVANRR SQRSEPNSFR TGHVVPVSKL 420 GAIQKRGNYR DLKTTPLANK SQRVWTRKTK IENERIGSNA GVRDTRDKQD LGGSRDLLIG 480 SIPVTLAECS TSSQIKVDQC TLDHQPGQRN ISSSSIQEKS VKIELVQSGT NKSKTKHWRP 540 VGRRERRKRE KIESVGESSN LIDDSCIPRN NSDGCSGLEG ARSSEATEEL HSTGKKLFSS 600 HEVKAFLAQR WKEAITSDHV KLVLSPETEL PECVENQDVQ VTAHIPSESC NRSILGSAEN 660 RLAGTNGPER AKNGTSKHAK FKAKPERGYK LKRIPEQRNS S

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MPAAKLRSSN NLDAMMFGQN LVKADETNVS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF  60
LSSLDPQADL SGWPLYPKVP MQKCDKCVRE FCSPINYRRH IRLHRRSLKI EKDSTKIRDL  120
MGAFWDKLSV DEAKDVISFD TVMLEGVPGS AVVRALASFI RKPGFFSLPQ SYVKAGAALL  180
DLIQGRPSRF PISSTELFSI LHDASEKTFL CPGTATSMQK FMFDGEPGKI GFEMKNLIAC  240
TSFLVEQKLI KECLVEKDAE ALRCQKLLVE EEEAAQRRQF ELLERKRLKK LRQKEQKAKE  300
QVEVEDVDLK EDSSISVEVS ESTSISHTPE LSIVRSASTD EGCDNADNAE KAEIDMAYET  360
SNSNDPQDFD HQHVQQGNSQ QQGDGQQHGN GRQRAVANRR SQRSEPNSFR TGHVVPVSKL  420
GAIQKRGNYR DLKTTPLANK SQRVWTRKTK IENERIGSNA GVRDTRDKQD LGGSRDLLIG  480
SIPVTLAECS TSSQIKVDQC TLDHQPGQRN ISSSSIQEKS VKIELVQSGT NKSKTKHWRP  540
VGRRERRKRE KIESVGESSN LIDDSCIPRN NSDGCSGLEG ARSSEATEEL HSTGKKLFSS  600
HEVKAFLAQR WKEAITSDHV KLVLSPETEL PECVENQDVQ VTAHIPSESC NRSILGSAEN  660
RLAGTNGPER AKNGTSKHAK FKAKPERGYK LKRIPEQRNS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	291	ERKRLKKL
2	543	550	RRERRKRE
3	546	551	RRKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-92	C2H2 family protein