PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026400554.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 531aa MW: 55710.1 Da PI: 8.4901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026400554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_026400554.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	16.9	1.8e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C+k + +s+ k H++t+ XP_026400554.1 144 YKCDKCSKKYAVQSDWKAHQKTC 166 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MPVDLENSSA MSVSTVSGEA SVSSSGNQTG VAPASTVVKK KRNLPGMPDP NAEVLALSPK 60 TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT NKEIRKRVYV CPEPSCVHHD 120 PTRALGDLTG IKKHFCRKHG EKKYKCDKCS KKYAVQSDWK AHQKTCGTKE YKCACGTLFS 180 RRDSFITHRA FCDALAEEAA KVHTILPNSK PEEVVSISFV KPKAVVSSPP PPLSPLPLTP 240 PPPPPPPAMD VLPEYDQIPE LPKKSTGILQ QIPPSTCVNG STSSSSSSSN LSRSNGLFES 300 IFSSSTMAGL QPQTSAFSNI ICGMSHSDRP SNVATASGAE PTSLCLATNG GSTLFAPLGQ 360 DRHQYAPSPQ PTMSATALLQ KAAQMGAAAT NASLLRGFGI SNSSTGCEQE ALNWSHPIDN 420 EPGPPASGLG ISHPCDGGGF PCDGASSLTE LMMGPSSLFG QRPTTLDLLG LGLGVGGGGA 480 SKGGLSALIT SIGGGGGGFD MATAAFGGGN LLERAWETDD RKTNTSSAAL P

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MPVDLENSSA MSVSTVSGEA SVSSSGNQTG VAPASTVVKK KRNLPGMPDP NAEVLALSPK  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT NKEIRKRVYV CPEPSCVHHD  120
PTRALGDLTG IKKHFCRKHG EKKYKCDKCS KKYAVQSDWK AHQKTCGTKE YKCACGTLFS  180
RRDSFITHRA FCDALAEEAA KVHTILPNSK PEEVVSISFV KPKAVVSSPP PPLSPLPLTP  240
PPPPPPPAMD VLPEYDQIPE LPKKSTGILQ QIPPSTCVNG STSSSSSSSN LSRSNGLFES  300
IFSSSTMAGL QPQTSAFSNI ICGMSHSDRP SNVATASGAE PTSLCLATNG GSTLFAPLGQ  360
DRHQYAPSPQ PTMSATALLQ KAAQMGAAAT NASLLRGFGI SNSSTGCEQE ALNWSHPIDN  420
EPGPPASGLG ISHPCDGGGF PCDGASSLTE LMMGPSSLFG QRPTTLDLLG LGLGVGGGGA  480
SKGGLSALIT SIGGGGGGFD MATAAFGGGN LLERAWETDD RKTNTSSAAL P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-128	C2H2 family protein