PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395481.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 457aa MW: 49615.5 Da PI: 9.2142

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	210	232	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F+ ++L++H+ H XP_026395481.1 210 VCKECGEIFPKTESLEHHQAIkH 232 8******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MAFSTFSPTP DNNNNHHHHH HPHSRTPSRT TPKRNTSTTT SSKKKPQPPA KNPSSWNQIK 60 SLITCKTVEN SKVHDPSSSK NNNIHGGYSK LSSSCSSICN FRDVVHGNTR VVHRADNSPE 120 NSSVGQETGL LSRKSVHNIG SSSNRSTTSS IRSSIHTNTG TTPLHGSYTN STTTSSSRGM 180 QLRKLSGCYE CHMIVDPSRR PITPRTTICV CKECGEIFPK TESLEHHQAI KHAVSELGPE 240 DSGRNIVEII FKSSWLKKDS PICKIERILK VHNTQRTIQR FEDCRDSVKI RATSNSTTRK 300 NARCAADGNE LLRFHCTSLT CGLGACGSTS LCGSVPGCGV CTIIRHGFPG KAHDHTKGVC 360 TTATSGRSHD SFGGGALESL GGGNRRAMLV CRVIAGRVKR TADDDDAAQE EDNNTNIMAG 420 TYDSVAGYAG IYANLEELIV FNPKAILPCF VVIYTSQ

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MAFSTFSPTP DNNNNHHHHH HPHSRTPSRT TPKRNTSTTT SSKKKPQPPA KNPSSWNQIK  60
SLITCKTVEN SKVHDPSSSK NNNIHGGYSK LSSSCSSICN FRDVVHGNTR VVHRADNSPE  120
NSSVGQETGL LSRKSVHNIG SSSNRSTTSS IRSSIHTNTG TTPLHGSYTN STTTSSSRGM  180
QLRKLSGCYE CHMIVDPSRR PITPRTTICV CKECGEIFPK TESLEHHQAI KHAVSELGPE  240
DSGRNIVEII FKSSWLKKDS PICKIERILK VHNTQRTIQR FEDCRDSVKI RATSNSTTRK  300
NARCAADGNE LLRFHCTSLT CGLGACGSTS LCGSVPGCGV CTIIRHGFPG KAHDHTKGVC  360
TTATSGRSHD SFGGGALESL GGGNRRAMLV CRVIAGRVKR TADDDDAAQE EDNNTNIMAG  420
TYDSVAGYAG IYANLEELIV FNPKAILPCF VVIYTSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-146	C2H2 family protein