PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395124.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

FAR1

Protein Properties

Length: 667aa MW: 76582.4 Da PI: 7.2693

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.3	1.2e-08	118	197	16	90
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +s+skk + +g+ + t+ C ++g +++kkk e ++r++ + ++gC +lk + +kw + + HnHel+ XP_026395124.1 118 ISHSKK-TLKGKGSRITLGCERSGWYTDHKKKslqpkpPEPRKRKSRTRKCGCPFQLKCDWVEGNKWTLRAVCGRHNHELS 197 445444.47777899*******99999999999998888888999999******999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MVDVNFGREI MEVDSSPEGS FDSGRHLEST ATQMVDGPIN SSPCMEIIPS VGSPQLDVDP 60 GVDGPQLVET TSITETYSQP VTVDLTPFFV TDQVFDSREA IIEWCQEVGK KNNTVLVISH 120 SKKTLKGKGS RITLGCERSG WYTDHKKKSL QPKPPEPRKR KSRTRKCGCP FQLKCDWVEG 180 NKWTLRAVCG RHNHELSDTL TGHAYAGRLK EEEKQLVLHL TATGVPPQQV LIALKEKSKE 240 NYSTLKTIYN VKSKHRKSQV EGKSAMQQVM ELLARYHYVE KHRSNEETNE VRDIFWAHPE 300 SMLLAKCFPS VLMVDSTCKT NRFKMPLIHI VGISSTGKLF TVAFAFMEAD TEQHYIWALT 360 QLKWMYMPNT LPSLLVTDRE SALVNAIDIV FPRSSRLLCT WHLNQQVQAN CEKAFEDNDE 420 WEQFHTDWNH VWQAETMDEY GDAYADFATK WAPKYPSCIV YLRDTWLIQK EKFALAWTNK 480 IKHFGNTTTK ADKEHENLRK YLVSAVDSYS TCWKAMHNMI KDEIAQIKFS FELSLTTLNQ 540 EHLSPALEEL RNHVSHKALE LVLFEIHRAE NLGNEESSCS CFLHSTHGLP CAHELVKYVP 600 QGKAIPLLNI DSHWKQLSIV PTQELYNGFD VLPEFQLLRQ KWREAVEPRR SLLLQKIKDI 660 ATFKPRN

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MVDVNFGREI MEVDSSPEGS FDSGRHLEST ATQMVDGPIN SSPCMEIIPS VGSPQLDVDP  60
GVDGPQLVET TSITETYSQP VTVDLTPFFV TDQVFDSREA IIEWCQEVGK KNNTVLVISH  120
SKKTLKGKGS RITLGCERSG WYTDHKKKSL QPKPPEPRKR KSRTRKCGCP FQLKCDWVEG  180
NKWTLRAVCG RHNHELSDTL TGHAYAGRLK EEEKQLVLHL TATGVPPQQV LIALKEKSKE  240
NYSTLKTIYN VKSKHRKSQV EGKSAMQQVM ELLARYHYVE KHRSNEETNE VRDIFWAHPE  300
SMLLAKCFPS VLMVDSTCKT NRFKMPLIHI VGISSTGKLF TVAFAFMEAD TEQHYIWALT  360
QLKWMYMPNT LPSLLVTDRE SALVNAIDIV FPRSSRLLCT WHLNQQVQAN CEKAFEDNDE  420
WEQFHTDWNH VWQAETMDEY GDAYADFATK WAPKYPSCIV YLRDTWLIQK EKFALAWTNK  480
IKHFGNTTTK ADKEHENLRK YLVSAVDSYS TCWKAMHNMI KDEIAQIKFS FELSLTTLNQ  540
EHLSPALEEL RNHVSHKALE LVLFEIHRAE NLGNEESSCS CFLHSTHGLP CAHELVKYVP  600
QGKAIPLLNI DSHWKQLSIV PTQELYNGFD VLPEFQLLRQ KWREAVEPRR SLLLQKIKDI  660
ATFKPRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	161	KKKSLQPKPPEPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-19	FAR1 family protein