PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026394333.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 534aa MW: 56149.6 Da PI: 8.363

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026394333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_026394333.1 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	16.9	1.8e-05	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C+k + +s+ k H++t+ XP_026394333.1 143 YKCDKCSKKYAVQSDWKAHQKTC 165 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MPVDLENSSA MSVSTVSGEA SVSSSGNQTG APASTVVKKK RNLPGMPDPN AEVLALSPKT 60 LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTT KEIRKRVYVC PEPSCVHHDP 120 TRALGDLTGI KKHFCRKHGE KKYKCDKCSK KYAVQSDWKA HQKTCGTKEY KCACGTLFSR 180 RDSFITHRAF CDALAEEAAK VHTILPNSKP EEVVSISFVK PKAVVSSPPP PPPPLSPLPL 240 TPPPPPLPPA MDVLPEYDQI PELPKKSTGI LQQIPPSTCV NGSTSSSSSS SNLSSSNSLF 300 ESIFSSSTMA GTLQLQTRTS AFSDIICRMS HSDRSSNVAT ASGAEPTSLC LATNGGSTLF 360 APLGQDCHQY APSPQPTMSA TALLQKAAQM GAAATNASLL RGFGISNSST GCEQEALNWS 420 HPIDNEPGPP ASGLGISHPC DGGGFPCDGA SSLTELMMGP SSLFGQRPTT LDLLGLGLSV 480 GGGGASKGGL SALITSIGGG GGFDMASAAF GGGNLLERAW ETDDRKTNTS AALP

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MPVDLENSSA MSVSTVSGEA SVSSSGNQTG APASTVVKKK RNLPGMPDPN AEVLALSPKT  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTT KEIRKRVYVC PEPSCVHHDP  120
TRALGDLTGI KKHFCRKHGE KKYKCDKCSK KYAVQSDWKA HQKTCGTKEY KCACGTLFSR  180
RDSFITHRAF CDALAEEAAK VHTILPNSKP EEVVSISFVK PKAVVSSPPP PPPPLSPLPL  240
TPPPPPLPPA MDVLPEYDQI PELPKKSTGI LQQIPPSTCV NGSTSSSSSS SNLSSSNSLF  300
ESIFSSSTMA GTLQLQTRTS AFSDIICRMS HSDRSSNVAT ASGAEPTSLC LATNGGSTLF  360
APLGQDCHQY APSPQPTMSA TALLQKAAQM GAAATNASLL RGFGISNSST GCEQEALNWS  420
HPIDNEPGPP ASGLGISHPC DGGGFPCDGA SSLTELMMGP SSLFGQRPTT LDLLGLGLSV  480
GGGGASKGGL SALITSIGGG GGFDMASAAF GGGNLLERAW ETDDRKTNTS AALP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-107	C2H2 family protein