PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026391879.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

NF-YC

Protein Properties

Length: 298aa MW: 33065.4 Da PI: 4.7795

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026391879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.4	6.7e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++++v++ ++fdfl +iv + XP_026391879.1 6 DTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYDVTLRRGAKTMSSLHLKQCVQSFNVFDFLKEIVSK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MRKKLDTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YDVTLRRGAK 60 TMSSLHLKQC VQSFNVFDFL KEIVSKVPDF GGSDAGGEDR AHKRRKTVVD EDNDSEEEGK 120 RNRISHETSH NSSSGRGRGR SRGRGRGRGR PPVDRESSRL EKCEGDPDMS PQHDNQNPET 180 ISPDNGIEPR ESADNMTTIG STSDTEIRNF DLNVVLDDSG TNQLVRSDSG TTAAPSAIAA 240 STSGPATSAE PPPEIKQHEE YPGWSVSDMD KMSIYPLQLA QLNSKRLDEE EDYDEEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	146	RGRGRSRGRGR
2	138	148	RGRGRSRGRGR
3	140	150	RGRGRSRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-60	NF-YC family protein