PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026391878.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

NF-YC

Protein Properties

Length: 299aa MW: 33152.4 Da PI: 4.7795

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026391878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.4	6.7e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++++v++ ++fdfl +iv + XP_026391878.1 6 DTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYDVTLRRGAKTMSSLHLKQCVQSFNVFDFLKEIVSK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MRKKLDTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YDVTLRRGAK 60 TMSSLHLKQC VQSFNVFDFL KEIVSKVPDF GGSDAGGEDR AHKRSRKTVV DEDNDSEEEG 120 KRNRISHETS HNSSSGRGRG RSRGRGRGRG RPPVDRESSR LEKCEGDPDM SPQHDNQNPE 180 TISPDNGIEP RESADNMTTI GSTSDTEIRN FDLNVVLDDS GTNQLVRSDS GTTAAPSAIA 240 ASTSGPATSA EPPPEIKQHE EYPGWSVSDM DKMSIYPLQL AQLNSKRLDE EEDYDEEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	147	RGRGRSRGRGR
2	139	149	RGRGRSRGRGR
3	141	151	RGRGRSRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-60	NF-YC family protein